Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D10_e460_08.seq
(1548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 2.5
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_4523| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) 29 7.6
SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.6
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08) 29 7.6
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 10.0
SB_19181| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
SB_7969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.1 bits (67), Expect = 2.5
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 1237 NXGPGPSXRGFIPPGLXGXNXXPX-PGTPSREXSPXPPXPXGXGXXNG 1377
N PGP PPG G P PG P P PP P G NG
Sbjct: 686 NGQPGPPGING-PPGQIGEMGPPGLPGPPGPASPPSPPGPPGPPGPNG 732
Score = 29.1 bits (62), Expect = 10.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 1237 NXGPGPSXRGFIPPGLXGXNXXPX-PGTPSREXSPXPPXPXG 1359
N PGP PPG G P PG P P PP P G
Sbjct: 771 NGQPGPPGING-PPGQVGEMGPPGLPGPPGPASPPSPPGPPG 811
Score = 29.1 bits (62), Expect = 10.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 1237 NXGPGPSXRGFIPPGLXGXNXXPX-PGTPSREXSPXPPXPXG 1359
N PGP PPG G P PG P P PP P G
Sbjct: 856 NGQPGPPGING-PPGQVGEMGPPGLPGPPGPASPPSPPGPPG 896
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 30.7 bits (66), Expect = 3.3
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 1273 PPGLXGXNXXPXPGTPSREXSPX-PPXPXGXGXXN 1374
PPG P PG P++ P PP P G G N
Sbjct: 799 PPGARPTPPPPPPGKPTKPTKPSLPPVPPGIGKAN 833
>SB_4523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 106 TSTNXRKS-KPSCRIXCSPGXXH*XLERPPPRGS 8
T+T+ R S KP+ CSPG LERPPPR S
Sbjct: 33 TATSFRTSNKPTISNSCSPGDPL-VLERPPPRWS 65
>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
Length = 725
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 220 LRFSLNTQNIIVRENILCLLRFLFHIIFKIITKAG*--KFTSTNXRKSKPSCRI-XCSPG 50
LR L + II +L + L II ++T + S+ ++ +P+C CSPG
Sbjct: 140 LRLHLRYKGIITTRRVLFAI-ILIWIIDVLLTSLQWIAEDPSSAIQRKQPACSSNSCSPG 198
Query: 49 XXH*XLERPPPRGS 8
LERPPPR S
Sbjct: 199 DPL-VLERPPPRWS 211
>SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 100 TNXRKSKPSCRIXCSPGXXH*XLERPPPRGS 8
+N R++ P CSPG LERPPPR S
Sbjct: 12 SNVREAAPLASNSCSPGDPL-VLERPPPRWS 41
>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 240
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 310 PGIIKTELENACSNGPSDPP 251
PG + ENACS+ P DPP
Sbjct: 93 PGAVYLAAENACSSKPCDPP 112
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 1249 GPSXRGFIPPGLXGXNXXPX-PGTPSREXSPXPPXPXGXGXXNGI 1380
G + RG IP GL G P PG ++ P P P G G+
Sbjct: 792 GTNGRGGIP-GLKGERGSPGEPGKAGKQGPPGPSGPLGANGEPGV 835
>SB_19181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 112 KFTSTNXRKSKPSCRIXCSPGXXH*XLERPPPRGS 8
K +S + S P CSPG LERPPPR S
Sbjct: 5 KMSSASSTTSAPVISNSCSPGDPL-VLERPPPRWS 38
>SB_7969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -3
Query: 106 TSTNXRKSKPSCRIXCSPGXXH*XLERPPPRGS 8
TS N R + CSPG LERPPPR S
Sbjct: 22 TSQNKRPENKALSNSCSPGDPL-VLERPPPRWS 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,584,729
Number of Sequences: 59808
Number of extensions: 558045
Number of successful extensions: 2341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2329
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5047244110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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