Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D10_e460_08.seq
(1548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97189-8|AAK68256.1| 61|Caenorhabditis elegans Hypothetical pr... 33 0.72
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 32 1.3
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 32 1.3
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 30 3.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 3.8
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 30 5.1
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 30 5.1
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 6.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 8.8
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 8.8
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 8.8
>U97189-8|AAK68256.1| 61|Caenorhabditis elegans Hypothetical
protein C48B6.10 protein.
Length = 61
Score = 32.7 bits (71), Expect = 0.72
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 237 MVDLSGGSDGPLEHAFSNSVFIIPGVIVTSLTVF 338
MV+L G GP +F NSVFIIP +++ ++ +
Sbjct: 1 MVELGG--KGPYSTSFDNSVFIIPAIVIVAVFAY 32
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical protein
C53B4.5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 1243 GPGPSXRGFIPPGLXGXNXXPXPGTPSREXSPXPPXPXG 1359
GPG PPG G N P PG+P P P G
Sbjct: 183 GPGGKPGPAGPPGENGRNGEPQPGSPGEPGRPGQPGSRG 221
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 1243 GPGPSXRGFIPPGLXGXNXXPXPGTPSREXSPXPPXPXG 1359
GPG PPG G N P PG P P P G
Sbjct: 185 GPGGKPGPAGPPGENGNNGEPQPGAPGEPGQPGQPGQRG 223
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical protein
T05A1.2 protein.
Length = 300
Score = 30.3 bits (65), Expect = 3.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 1237 NXGPG-PSXRGFIPPGLXGXNXXPXPGTPSREXSPXPPXPXGXGXXNG 1377
N PG P +G PPG G + P PG P + P P G G
Sbjct: 193 NGHPGKPGSQG--PPGPPGHSDEPKPGQPGQPGRAGPRGPRGVAGIKG 238
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 1276 PGLXGXNXXPXPGTPSREXSPXPPXPXGXGXXNG 1377
PG G N PG P P PP P G G
Sbjct: 237 PGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGG 270
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical protein
F17C8.2 protein.
Length = 296
Score = 29.9 bits (64), Expect = 5.1
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 1246 PGPSXRGFIPPGLXGXNXXP-XPGTPSREXSPXPPXPXGXGXXNG 1377
PGP P G G + P PG ++ P PP P G NG
Sbjct: 155 PGPEG----PAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNG 195
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 29.9 bits (64), Expect = 5.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +1
Query: 1246 PGPSXRGFI--PPGLXGXNXXPXPGTPSREXSPXPPXPXG 1359
PGP R PPGL G G+P P PP P G
Sbjct: 249 PGPKGRTGEQGPPGLDGETIDGEDGSPGLPGPPGPPGPPG 288
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.5 bits (63), Expect = 6.7
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 1246 PGPSXRGFIPPGLXGXNXXPX-PGTPSREXSPXPPXPXGXGXXNG 1377
PGP P G G + P PG P R SP P P G +G
Sbjct: 142 PGPPG----PQGPTGNSGQPGRPGNPGRPGSPGTPGPVGPNGASG 182
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 29.1 bits (62), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 1246 PGPSXRGFIPPGLXGXNXXP-XPGTPSREXSPXPPXPXG 1359
PGP PPG G + P PG P ++ +P P P G
Sbjct: 153 PGPPG----PPGPPGDSGEPGSPGLPGQDAAPGEPGPKG 187
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 1273 PPGLXGXNXXP-XPGTPSREXSPXPPXPXGXGXXNG 1377
PPG G P PG P + SP P P G +G
Sbjct: 220 PPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDG 255
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.1 bits (62), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 1246 PGPSXRGFIPPGLXGXNXXP-XPGTPSREXSPXPPXPXG 1359
PGP PPG G + P PG P ++ +P P P G
Sbjct: 153 PGPPG----PPGPPGDSGEPGSPGLPGQDAAPGEPGPKG 187
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 1273 PPGLXGXNXXP-XPGTPSREXSPXPPXPXGXGXXNG 1377
PPG G P PG P + SP P P G +G
Sbjct: 219 PPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDG 254
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 1246 PGPSXRGFIPPGLXGXNXXP-XPGTPSREXSPXPPXPXG 1359
PGP PPG G + P PG P ++ +P P P G
Sbjct: 153 PGPPG----PPGPPGDSGEPGSPGLPGQDAAPGEPGPKG 187
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 1273 PPGLXGXNXXP-XPGTPSREXSPXPPXPXGXGXXNG 1377
PPG G P PG P + SP P P G +G
Sbjct: 220 PPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDG 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,696,161
Number of Sequences: 27780
Number of extensions: 477155
Number of successful extensions: 1447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4462926140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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