Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D10_e460_08.seq
         (1548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31920.1 68415.m03899 expressed protein                             31   1.5  
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    31   2.7  

>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 325 LVTITPGIIKTELENACSNGPSDPPLRST 239
           + ++TPG++   L  A  N PS PPL S+
Sbjct: 1   MASLTPGVLSNLLNIAAGNSPSSPPLLSS 29


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
            receptor kinase 1 (BAK1) / somatic embryogenesis
            receptor-like kinase 3 (SERK3) identical to SP|Q94F62
            BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
            1 precursor (EC 2.7.1.37) (BRI1-associated receptor
            kinase 1) (Somatic embryogenesis receptor-like kinase 3)
            {Arabidopsis thaliana}; contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain;
            identical to cDNA somatic embryogenesis receptor-like
            kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 1267 FIPPGLXGXNXXPXPGTPSREXSPXPPXPXGXGXXNG 1377
            F P         P P +P    SP PP P G     G
Sbjct: 189  FTPISFANTKLTPLPASPPPPISPTPPSPAGSNRITG 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,846,649
Number of Sequences: 28952
Number of extensions: 405800
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4154233152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)