Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D09_e452_07.seq
(1515 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 63 5e-10
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 56 5e-08
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 56 5e-08
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 56 8e-08
At3g28730.1 68416.m03587 structure-specific recognition protein ... 52 8e-07
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 52 8e-07
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 51 2e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 47 4e-05
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 42 8e-04
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 36 0.053
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 36 0.053
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 36 0.092
At2g38770.1 68415.m04760 expressed protein 29 8.0
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 62.9 bits (146), Expect = 5e-10
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +3
Query: 138 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 311
+K + ++KPKRP++A+ ++++ R+ KSEH G + AK GGE WKS+ ++K ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYL 165
Query: 312 XXXXXXXXQYAKDLESYNAN 371
+Y K LES +A+
Sbjct: 166 DKAAELKAEYNKSLESNDAD 185
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 56.4 bits (130), Expect = 5e-08
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 138 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 308
+K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 309 XXXXXXXXXQYAKDLESYNAN 371
+Y K +++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 56.4 bits (130), Expect = 5e-08
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 138 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 308
+K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 309 XXXXXXXXXQYAKDLESYNAN 371
+Y K +++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 55.6 bits (128), Expect = 8e-08
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +3
Query: 150 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 320
K +KPKRP SA+ +++ R K EHP K V + K GGE WKS+ D K+ +
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 321 XXXXXQYAKDLESYN 365
+Y K++++YN
Sbjct: 90 DKRKVEYEKNMKAYN 104
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 52.4 bits (120), Expect = 8e-07
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 141 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 314
KK K + PKR MS +M + R+ IK EHPG+ E+ K G+ W+ M DK +
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613
Query: 315 XXXXXXXQYAKDLESY 362
+Y ++ Y
Sbjct: 614 KAQVDKQRYKDEISDY 629
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 52.4 bits (120), Expect = 8e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +3
Query: 150 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 320
K +KPKRP SA+ +++ RE K E+P K V + K G+ WKS+ D K+ +
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 321 XXXXXQYAKDLESYN 365
+Y K++++YN
Sbjct: 93 EKRKVEYEKNIKAYN 107
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 51.2 bits (117), Expect = 2e-06
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +3
Query: 138 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSI 305
+KKN+ D KPK+P S+Y L+ AR+ + EHPG+ + + W + ++K +
Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQV 420
Query: 306 WXXXXXXXXXQYAKDLESYN 365
+ Y K++E YN
Sbjct: 421 YNSKAAELMEAYKKEVEEYN 440
Score = 48.4 bits (110), Expect = 1e-05
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 141 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXX 314
KK K KPK+P+SAY+++ N R +K E+ V E+AK GE WK++ + K+ +
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQ 295
Query: 315 XXXXXXXQYAKDLESY 362
Y +++E Y
Sbjct: 296 MAKKNKEIYLQEMEGY 311
Score = 35.1 bits (77), Expect = 0.12
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 138 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 290
+KK K + KRP + Y+LW ++K ++P E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.8 bits (106), Expect = 4e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 141 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 299
KK K KPK P+SA++++ N R ++ E+ V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDK 297
Score = 46.4 bits (105), Expect = 5e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 138 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSI 305
+KKN+ D KPK+P S+Y L+ R+++ E PG + WK S ++K +
Sbjct: 368 KKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQV 427
Query: 306 WXXXXXXXXXQYAKDLESYN 365
+ Y K++E+YN
Sbjct: 428 YNGKAAKLMEAYKKEVEAYN 447
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 132 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 290
A +KK K + KRP S+Y+LW ++K E+P E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 42.3 bits (95), Expect = 8e-04
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 156 TDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 290
T PK+P +A+ +L+ R+Q + E+P +K + EI K GE WK+M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 36.3 bits (80), Expect = 0.053
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 144 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 296
K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 36.3 bits (80), Expect = 0.053
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 144 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 296
K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 35.5 bits (78), Expect = 0.092
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 144 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXXX 317
K + D PK S Y + ++K HPG K +I++ GE+W + +K I+
Sbjct: 256 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGK 314
Query: 318 XXXXXXQYAKDLESY 362
+Y ++E Y
Sbjct: 315 AMEDKERYRTEMEDY 329
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 114 NNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEI 257
N+FKI +++ N +KP + + S R QI+SE LK ++
Sbjct: 560 NDFKIAQVKQPNIGEEKPSSVTAEVTFSIKSYRTQIRSEWNSLKEHDV 607
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,537
Number of Sequences: 28952
Number of extensions: 330715
Number of successful extensions: 904
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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