Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D08_e444_08.seq
(1556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12) 207 2e-53
SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06) 93 5e-19
SB_47010| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.3) 37 0.050
SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.27
SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9) 31 1.9
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.6
>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
Length = 398
Score = 207 bits (505), Expect = 2e-53
Identities = 110/221 (49%), Positives = 143/221 (64%), Gaps = 3/221 (1%)
Frame = +2
Query: 200 GFPDYHAPEHVTKALADIAVGDNPLLNQYTRGFGHPRLVQNLSKVYSPLIGREIDPFNEI 379
GFPD H+ AL + A DN L QYTR GHPRLV L+
Sbjct: 101 GFPDIAPESHIKAALIEAASSDNVALCQYTRSEGHPRLVNALA----------------- 143
Query: 380 LVTSGAYEALFSAILGH-VDTGDEVIVIEPFFDCYDFMIKSAGGVPKFIALKPKVSSGTI 556
A+++ + G ++ EVI+IEPFFDCY + SAGG P +I L+PK G
Sbjct: 144 --------AMYTKLQGREINALTEVILIEPFFDCYAPQVTSAGGKPVYIPLRPK--EGAT 193
Query: 557 TSADWVLDESELVSLFTSKTKMIILNTPHNPLGKAFTRQELELIADLCKKHNVLCLSDEV 736
+S D++LD EL S F+SKTK +++NTP+NPLGK F+R ELE+IA+LC +HN+LC+SDEV
Sbjct: 194 SSKDFLLDPEELESKFSSKTKAMVINTPNNPLGKVFSRSELEMIANLCIRHNILCISDEV 253
Query: 737 YEWMVYEPVKHIRIATLPGMWERTITVGSAGE--NVLGYRL 853
YEW+VY HIRIATLPGMWERTIT+GSAG+ +V G++L
Sbjct: 254 YEWLVYSGADHIRIATLPGMWERTITIGSAGKTLSVTGWKL 294
Score = 51.6 bits (118), Expect = 2e-06
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +3
Query: 828 GKTFSVTGWKTRWAYGPAXLMRNLQXGHXNXVYPCCXPVQK 950
GKT SVTGWK W+ PA L+RNLQ H N Y P Q+
Sbjct: 284 GKTLSVTGWKLGWSIAPAELIRNLQTVHANSSYTHVTPTQE 324
>SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06)
Length = 277
Score = 93.1 bits (221), Expect = 5e-19
Identities = 65/216 (30%), Positives = 110/216 (50%)
Frame = +2
Query: 185 VNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQYTRGFGHPRLVQNLSKVYSPLIGREID 364
+N+GQ PD P+ A+ + N + +Y+ G + LS Y ID
Sbjct: 36 LNIGQ--PDIKTPQVALDAVKNA----NIEVLEYSHSAGFDSYREKLSGYYKNQ-NLPID 88
Query: 365 PFNEILVTSGAYEALFSAILGHVDTGDEVIVIEPFFDCYDFMIKSAGGVPKFIALKPKVS 544
+I++T+G EAL A+ +D+ DEVI+ EPF+ Y+ ++G + + P +S
Sbjct: 89 K-QDIIITTGGSEALLFALGSVMDSDDEVIIPEPFYANYNGFAVASG-----VKVVPVIS 142
Query: 545 SGTITSADWVLDESELVSLFTSKTKMIILNTPHNPLGKAFTRQELELIADLCKKHNVLCL 724
S A +++ E L TSKTK I++ P NP G ++ +E+ +A++ KKH++ +
Sbjct: 143 SIETGFALPPIEDFE--KLITSKTKAILICNPGNPTGYLYSEEEINQLAEIAKKHDLFLI 200
Query: 725 SDEVYEWMVYEPVKHIRIATLPGMWERTITVGSAGE 832
+DEVY Y+ KH I T+ G+ I + S +
Sbjct: 201 ADEVYREFTYDGYKHNSIMTVSGLENHAIMIDSVSK 236
>SB_47010| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.3)
Length = 270
Score = 36.7 bits (81), Expect = 0.050
Identities = 11/39 (28%), Positives = 27/39 (69%)
Frame = +2
Query: 641 HNPLGKAFTRQELELIADLCKKHNVLCLSDEVYEWMVYE 757
H+P G + + + E + ++ ++HN+L +S++VY ++ Y+
Sbjct: 59 HDPTGASLSTERCEKLVNIAERHNLLIISNDVYAFLAYK 97
>SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 34.3 bits (75), Expect = 0.27
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 12/209 (5%)
Frame = +2
Query: 167 AEYKPAVNLGQGFPDYHAPEHVTKALAD-----IAVGDNPLLNQYTRGFGHPRLVQNLSK 331
AE V+LG G PD ++ + +A G+ L QY G ++ L+
Sbjct: 11 AEKGGIVSLGIGAPDKTLLAQCSELMMMASQHLVATGETSFL-QYGPRLGDIDALKALAS 69
Query: 332 VYSPLIGREIDPFNEILVTSGAYEALFSAILGHVDTGDEVIVIEP-FFDCYDFMIKSAGG 508
S +D N ++ SGA + L + GD V V +P +F + ++K G
Sbjct: 70 FLSKEYKAPVDVKN-LMFNSGASQGLKFLAGSLMQHGDTVFVEDPTYFIAINVLVKDQG- 127
Query: 509 VPKFIALKPKVSSGTITSADWVLDESELVSL--FTSKT--KMIILNTP--HNPLGKAFTR 670
+ + + D ++ + + T K + ++ TP +NP G T+
Sbjct: 128 -MNVVPVTTDEGGIDVEQLDQLMSKYASICSRPLTDKKPFRFMVYLTPTFNNPRGTDLTK 186
Query: 671 QELELIADLCKKHNVLCLSDEVYEWMVYE 757
+ + + +KH L + D+VY + ++
Sbjct: 187 ERSVKLVQVLRKHKALAICDDVYNVIYFK 215
>SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9)
Length = 130
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 569 WVLDESELVSLFTS------KTKMIILNTPHNPLGKAFTRQELELIADLCKKHNVLCLSD 730
W LD SEL K K +++ P NP G + + ++ + + K+ ++ ++D
Sbjct: 41 WQLDFSELERSIEDARKKGKKCKALVIINPGNPTGSILSEETIKKVLEFSVKNRLVVIAD 100
Query: 731 EVY 739
EV+
Sbjct: 101 EVF 103
>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 487 YDQICWWSTQVYSSQAESLKRNHHI 561
YD ICWW +Q Y A L H+
Sbjct: 740 YDDICWWHSQRYVITAAELVFRGHV 764
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,108,392
Number of Sequences: 59808
Number of extensions: 767251
Number of successful extensions: 1814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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