Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D08_e444_08.seq
(1556 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 28 0.25
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 23 7.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 9.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 9.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 9.4
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 27.9 bits (59), Expect = 0.25
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 872 VSPTGLPAGNRERFPPLSPL*WCAPTYRAT*QSL 771
+SP G P G+ FP L P+ +P ++T Q+L
Sbjct: 379 ISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTL 412
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 23.0 bits (47), Expect = 7.1
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 143 WVEYIQLAAEYKPAVNLGQGFPDYHAPEHVTKALADIAVGDNPLLNQ 283
W E + A+ +P+ ++ Q +P+ P KA+ + V + +Q
Sbjct: 22 WEEIRRQASVEQPSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQ 68
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 203 NLVRDSPLVCIQLLIGYTLPTHSFHRVHTVSVVRIYQTWYQXLVPNXL 60
NL+ L+ L+G+TLP S ++ + + T + LV L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 203 NLVRDSPLVCIQLLIGYTLPTHSFHRVHTVSVVRIYQTWYQXLVPNXL 60
NL+ L+ L+G+TLP S ++ + + T + LV L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 203 NLVRDSPLVCIQLLIGYTLPTHSFHRVHTVSVVRIYQTWYQXLVPNXL 60
NL+ L+ L+G+TLP S ++ + + T + LV L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 437 TGDEVIVIEPFFDCYDFMIKSA 502
T D V +I +F+C FM+ S+
Sbjct: 250 TSDAVPLIGSYFNCIMFMVASS 271
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 437 TGDEVIVIEPFFDCYDFMIKSA 502
T D V +I +F+C FM+ S+
Sbjct: 250 TSDAVPLIGSYFNCIMFMVASS 271
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 437 TGDEVIVIEPFFDCYDFMIKSA 502
T D V +I +F+C FM+ S+
Sbjct: 250 TSDAVPLIGSYFNCIMFMVASS 271
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 9.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 203 NLVRDSPLVCIQLLIGYTLPTHSFHRVHTVSVVRIYQTWYQXLVPNXL 60
NL+ L+ L+G+TLP S ++ + + T + LV L
Sbjct: 268 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 315
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 437 TGDEVIVIEPFFDCYDFMIKSA 502
T D V +I +F+C FM+ S+
Sbjct: 318 TSDAVPLIGSYFNCIMFMVASS 339
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,833
Number of Sequences: 438
Number of extensions: 6997
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54668625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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