Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D07_e436_07.seq
         (1488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.72 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.72 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   8.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   8.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 27/110 (24%), Positives = 48/110 (43%)
 Frame = +1

Query: 241 AIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAED 420
           A+QE  +R  E+  +     + LH      M      EAE  V   + +   Y++A +  
Sbjct: 179 AVQEERQRTKERDQSEVESTSSLH----SDMPIERILEAEKRVECKMEQQGNYENAVSHI 234

Query: 421 DTEFDQEDMEELAQDEHHD*IGSIPPIYEILLLKNMVNKYFIVVFHSSHR 570
               +++  + +A  +H     S+P   ++LLL+   N+  I  F  SHR
Sbjct: 235 CNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASF--SHR 282


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 27/110 (24%), Positives = 48/110 (43%)
 Frame = +1

Query: 241 AIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAED 420
           A+QE  +R  E+  +     + LH      M      EAE  V   + +   Y++A +  
Sbjct: 179 AVQEERQRTKERDQSEVESTSSLH----SDMPIERILEAEKRVECKMEQQGNYENAVSHI 234

Query: 421 DTEFDQEDMEELAQDEHHD*IGSIPPIYEILLLKNMVNKYFIVVFHSSHR 570
               +++  + +A  +H     S+P   ++LLL+   N+  I  F  SHR
Sbjct: 235 CNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASF--SHR 282


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 499 IYEILLLKNMVNKYFIVVFHSSHRWMPSLIN 591
           IY++  ++  ++   + V H+   WMP+ +N
Sbjct: 790 IYKVGNVQAYIDGNVVFVCHNGMNWMPTHLN 820


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 334 DEMEFNEAESNVNDLVSEYQQYQDATAEDDT 426
           DE  F+E +S +   +S + +Y D+ +  +T
Sbjct: 206 DERSFSEHDSVMLGEISPHHEYYDSKSSTET 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,686
Number of Sequences: 438
Number of extensions: 5646
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51917250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)