Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D07_e436_07.seq
(1488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 229 4e-60
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 229 4e-60
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 227 1e-59
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 227 1e-59
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 225 4e-59
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 225 4e-59
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 225 6e-59
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 219 5e-57
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 217 2e-56
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 87 4e-17
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 83 5e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 83 5e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 80 4e-15
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 80 4e-15
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 80 4e-15
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 51 2e-06
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 2e-05
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 35 0.16
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 35 0.16
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 33 0.36
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 31 1.5
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 31 1.9
At3g03140.1 68416.m00310 expressed protein 31 1.9
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ... 30 3.4
At3g50690.1 68416.m05546 leucine-rich repeat family protein 30 3.4
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 30 3.4
At4g08810.1 68417.m01450 expressed protein 30 4.5
At3g47490.2 68416.m05164 HNH endonuclease domain-containing prot... 30 4.5
At3g47490.1 68416.m05165 HNH endonuclease domain-containing prot... 30 4.5
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 30 4.5
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote... 29 5.9
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 29 7.8
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 229 bits (560), Expect = 4e-60
Identities = 100/132 (75%), Positives = 121/132 (91%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQML++QNKNSSYFVEWIPNNVK+ VCDIPP GLKM+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+++ +++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYED 438
Query: 439 EDMEELAQDEHH 474
E+ E Q+E +
Sbjct: 439 EEEGEYQQEEEY 450
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 229 bits (560), Expect = 4e-60
Identities = 100/132 (75%), Positives = 121/132 (91%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQML++QNKNSSYFVEWIPNNVK+ VCDIPP GLKM+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+++ +++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYED 438
Query: 439 EDMEELAQDEHH 474
E+ E Q+E +
Sbjct: 439 EEEGEYQQEEEY 450
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 227 bits (556), Expect = 1e-59
Identities = 99/124 (79%), Positives = 118/124 (95%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQML++QNKNSSYFVEWIPNNVK+ VCDIPP GLKM+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+++ E+++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEE 438
Query: 439 EDME 450
E+ E
Sbjct: 439 EEAE 442
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 227 bits (556), Expect = 1e-59
Identities = 99/125 (79%), Positives = 120/125 (96%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQ+L+IQNKNSSYFVEWIPNNVK++VCDIPPKGLKM++TF+GN+T+IQE+F
Sbjct: 320 GQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMF 379
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLV+EYQQYQDATA+++ E+D
Sbjct: 380 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEGEYDV 439
Query: 439 EDMEE 453
E+ EE
Sbjct: 440 EEEEE 444
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 225 bits (551), Expect = 4e-59
Identities = 100/131 (76%), Positives = 121/131 (92%), Gaps = 1/131 (0%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQM+++QNKNSSYFVEWIPNNVK++VCDI P+GL M+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+D+ E+++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEE 438
Query: 439 -EDMEELAQDE 468
ED EE+ E
Sbjct: 439 DEDEEEILDHE 449
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 225 bits (551), Expect = 4e-59
Identities = 96/122 (78%), Positives = 118/122 (96%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQ+L++QNKNSSYFVEWIPNNVK++VCDIPP G+KM+STF+GN+T+IQE+F
Sbjct: 320 GKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMF 379
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+++ E+D+
Sbjct: 380 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEDEYDE 439
Query: 439 ED 444
E+
Sbjct: 440 EE 441
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 225 bits (550), Expect = 6e-59
Identities = 99/130 (76%), Positives = 119/130 (91%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQM+++QNKNSSYFVEWIPNNVK+ VCDIPP GLKM+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQDATA+++ ++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEGYEY 438
Query: 439 EDMEELAQDE 468
E+ E Q+E
Sbjct: 439 EEDEVEVQEE 448
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 219 bits (534), Expect = 5e-57
Identities = 97/124 (78%), Positives = 118/124 (95%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G++S KEVDEQM++IQNKNSSYFVEWIPNNVK++VCDI PKGLKM+STFIGN+T+IQE+F
Sbjct: 319 GKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQ 438
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLV+EYQQYQDATA ++ E+++
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAGEE-EYEE 437
Query: 439 EDME 450
E+ E
Sbjct: 438 EEEE 441
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 217 bits (529), Expect = 2e-56
Identities = 97/125 (77%), Positives = 116/125 (92%), Gaps = 1/125 (0%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELF 258
G+MS KEVDEQM+++QNKNSSYFVEWIPNNVK++VCDI P GLKM+STFIGN+T+IQE+F
Sbjct: 319 GKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMF 378
Query: 259 KRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDAT-AEDDTEFD 435
+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN+NDLV+EYQQYQDAT E++ E D
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVGEEEYEED 438
Query: 436 QEDME 450
+E+ E
Sbjct: 439 EEEEE 443
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 86.6 bits (205), Expect = 4e-17
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ A
Sbjct: 381 NTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGGEGA 440
Query: 415 EDDTEFDQE 441
EDD E E
Sbjct: 441 EDDDEEGDE 449
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 83.0 bits (196), Expect = 5e-16
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ A
Sbjct: 381 NTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-GAEG 439
Query: 415 EDDTEFDQED 444
DD E + ED
Sbjct: 440 GDDEEDEGED 449
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 83.0 bits (196), Expect = 5e-16
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ A
Sbjct: 381 NTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-GAEG 439
Query: 415 EDDTEFDQED 444
DD E + ED
Sbjct: 440 GDDEEDEGED 449
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.8 bits (188), Expect = 4e-15
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGG 440
Query: 415 EDDTEFDQE 441
+D+ + +E
Sbjct: 441 DDEDDEGEE 449
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 79.8 bits (188), Expect = 4e-15
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGG 440
Query: 415 EDDTEFDQE 441
+D+ + +E
Sbjct: 441 DDEDDEGEE 449
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 79.8 bits (188), Expect = 4e-15
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPK--------GLKMSSTFIGN 234
G + K+V+ + +I+ K + FV+W P K + PP ++ + I N
Sbjct: 321 GDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380
Query: 235 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATA 414
+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGG 440
Query: 415 EDDTEFDQE 441
+D+ + +E
Sbjct: 441 DDEDDEGEE 449
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 50.8 bits (116), Expect = 2e-06
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPP---KGLKMSSTFIGNTTAIQ 249
G + +V E + I+ + F+EW P +++ A+ P ++S + + T+I+
Sbjct: 328 GEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIR 387
Query: 250 ELFKRISEQFSAMFRRKAFLHWYTGEGM----DEMEFNEAESNVNDLVSEYQQYQDATAE 417
LF + Q+ + +++AFL Y M D EF+E+ + LV EY+ + +
Sbjct: 388 HLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACE---SP 444
Query: 418 DDTEFDQEDMEELAQDE 468
D ++ ED E+L E
Sbjct: 445 DYIKWGMEDPEQLMTGE 461
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 2e-05
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Frame = +1
Query: 79 GRMSMKEVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPP---KGLKMSSTFIGNTTAIQ 249
G + +V E + I+ + F++W P +++ A+ P ++S + + T+I+
Sbjct: 328 GEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGLMLASHTSIR 387
Query: 250 ELFKRISEQFSAMFRRKAFLHWYTGEGM----DEMEFNEAESNVNDLVSEYQQYQDATAE 417
LF R Q+ + +++AFL Y M D EF+E+ + LV EY+ + +
Sbjct: 388 HLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACE---SP 444
Query: 418 DDTEFDQEDMEELAQDE 468
D ++ ED +L E
Sbjct: 445 DYIKWGMEDPGQLMTGE 461
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 313 WYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 453
W+TGE ++ EF E +++ D + E + + ++D E D ED EE
Sbjct: 293 WFTGEAIEGEEF-EIDNDDEDDIDEDEDEDEEDEDEDEEEDDEDEEE 338
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 34.7 bits (76), Expect = 0.16
Identities = 40/140 (28%), Positives = 59/140 (42%)
Frame = +2
Query: 47 SPGLQXIGTRAVACL*RKSMSRCSQFKTRTHRTSWNGSRIT*RPPCVTSRLKASRCPRHS 226
SPG + G R V KS+SR + S + S+ R P + + SR P
Sbjct: 433 SPGSEEKG-RHVRRSPTKSVSRSPVRVKKERDISRSPSKSLSRSPLRSPKRVISRSPVRG 491
Query: 227 SVTPQPSRSCLREYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAMSMIWFRNTSSTRT 406
+ PSRS +R S R S +P+R+ R +S R + S I S +R+
Sbjct: 492 RIARSPSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVR-SSRRSLSRSPIQLSRRSLSRS 550
Query: 407 RPLKMTRNLTRKIWRSSLKT 466
R+L+R RS K+
Sbjct: 551 PTRLSRRSLSRSPIRSPRKS 570
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 33.5 bits (73), Expect = 0.36
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 313 WYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 453
W+TGE M+ +F E + + D + E + +D ED+ + D ED EE
Sbjct: 294 WFTGEAMEAEDF-EIDDDEEDDIDEDEDEED--EEDEEDDDDEDEEE 337
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 383 ETKSLTLLSASLNSISSMPSPVYQCKKALRLNIAENCSDILLNSSWMAVVLPMNVEDILR 204
E +SLT L A ++ +PS + Q KK RL++ C +L + + +LR
Sbjct: 714 ELESLTTLLADFTALREIPSTINQLKKLKRLSL-NGCKGLLSDDIDNLYSEKSHSVSLLR 772
Query: 203 P--LGGMSHTAVFTL 165
P L G+++ + +L
Sbjct: 773 PVSLSGLTYMRILSL 787
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 331 MDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEH 471
MDE +EAE+ N + +Y Q +++ +E+++EL++D+H
Sbjct: 206 MDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDH 252
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 31.1 bits (67), Expect = 1.9
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 97 EVDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFK-RISE 273
E D SI +SSY PNN + V + KG + T + ++L + R+ +
Sbjct: 358 EEDHYESSISG-DSSYLYSQNPNNEASTVSNWQHKGKRNFRTLPRRSARKRKLHRNRLED 416
Query: 274 QFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 405
++R+AF G G+D N+ +D +Q+ D
Sbjct: 417 GRYCEYKRRAFGQKPMGYGLDFNGINDMSDGTDDTDPNERQFGD 460
>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
region
Length = 1088
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 517 VTRFHRWEV*NRFNHGARLERAPPYLPGQIPCHLQRSRPGTAGI 386
V +H E NRF HG+ + R P GQIP + + G G+
Sbjct: 954 VGEYHLGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGV 997
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 334 DEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 477
D+ E E E ++ V E + +D+ E+D D+ED EE ++E D
Sbjct: 262 DDSESGEEEVGEDNDVVEVHEIEDSENEEDGVDDEEDDEEDEEEEEVD 309
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 298 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTE 429
KAFL + G+ E+E NE E + L+ +Y+ + E+ TE
Sbjct: 343 KAFLEDFDGDNDGELEENEFEEGIARLLKQYKFNVEDQRENQTE 386
>At4g08810.1 68417.m01450 expressed protein
Length = 552
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 260 REYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAMSMIWFRNTSSTRTRPLKMTRNLTR 439
R Y L A + G R W +WN +R + + R + R PL+++++ +
Sbjct: 309 RYYFDFEHLKETASIVEEGEFLRDWKKWNRLHKRKVPV---RKVKTHRVSPLQLSKDKST 365
Query: 440 KIWR 451
IWR
Sbjct: 366 IIWR 369
>At3g47490.2 68416.m05164 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 176
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 215 PRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPAR 328
P+HS++ P P+R R SSSP + LS +G+P R
Sbjct: 35 PQHSAMKPDPTRRRNRALSSSSPSKTRPELS-SGSPNR 71
>At3g47490.1 68416.m05165 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 234
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 215 PRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPAR 328
P+HS++ P P+R R SSSP + LS +G+P R
Sbjct: 35 PQHSAMKPDPTRRRNRALSSSSPSKTRPELS-SGSPNR 71
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 WYTGEGM--DEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 453
W+TGE + D+++ + + +++ E + D EDD E D ED +E
Sbjct: 293 WFTGEAVEADDLDIEDDDDEIDEDDDEEDEEDD---EDDEEEDDEDDDE 338
>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 1123
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 383 ETKSLTLLSASLNSIS-SMPSPVYQCKKALRLNIAEN 276
E KSL +L S N+ S ++PS + C K L+++EN
Sbjct: 97 ELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +1
Query: 325 EGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 477
E + ++ N+AE + + +E + ++ AE+D E ++E+ EE ++E +
Sbjct: 55 EDQEVVKPNDAEEDDDGDDAEEDEEEEVEAEEDEEAEEEEEEEEEEEEEEE 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,322,135
Number of Sequences: 28952
Number of extensions: 401747
Number of successful extensions: 1267
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3961461312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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