Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D06_e428_08.seq
(1518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 84 3e-16
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 83 7e-16
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 51 2e-06
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 34 0.34
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 30 5.5
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 83.8 bits (198), Expect = 3e-16
Identities = 43/100 (43%), Positives = 59/100 (59%)
Frame = +1
Query: 277 LDFNTIEEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIE 456
+D N +EK ++ +F +AMD+LS++D+KLPQV N++P PILKE IE
Sbjct: 335 MDLNDDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIE 394
Query: 457 ILFGLGLIKALFATETXAMGFEHACEDCCFY*LPKISTDR 576
ILF GLIK LFATET ++G + F + K DR
Sbjct: 395 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDR 434
Score = 82.2 bits (194), Expect = 1e-15
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Frame = +3
Query: 3 IFPAGGDGLHLVVDESGNFKEENFNTAMAVLSNAGEXXXXXXXXXXXXXXXXNQ----TN 170
+FP+GGDGL+LVVDE F+E++F + L A E + ++
Sbjct: 240 VFPSGGDGLYLVVDEKSKFREDSFQKGLNALVPASENDKKRENGKWQKGLLTGKPSEDSD 299
Query: 171 IFNIVKMIMERNFAPVIIFSFSKKDCELYAMQMASIGL 284
IF +VKMI++R + PVI+FSFSK++CE AMQMA + L
Sbjct: 300 IFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDL 337
Score = 48.0 bits (109), Expect = 2e-05
Identities = 30/71 (42%), Positives = 38/71 (53%)
Frame = +2
Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXVLMIXGXXILXIDSKVXPXG 697
LNMPA+TVVFTN +KF F + QMSGRA + + G IL +D K+ P
Sbjct: 415 LNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQ-RGICILMVDEKMEP-S 472
Query: 698 RXKAWVXGKAD 730
K + G AD
Sbjct: 473 TAKMILKGSAD 483
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 82.6 bits (195), Expect = 7e-16
Identities = 41/90 (45%), Positives = 56/90 (62%)
Frame = +1
Query: 277 LDFNTIEEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIE 456
LDFNT EEK +++VF++A+ LSEEDR LP +E ++P P++KE +E
Sbjct: 362 LDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELVE 421
Query: 457 ILFGLGLIKALFATETXAMGFEHACEDCCF 546
+LF GL+KALFATET AMG + F
Sbjct: 422 LLFQEGLVKALFATETFAMGLNMPAKTVVF 451
Score = 77.4 bits (182), Expect = 3e-14
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Frame = +3
Query: 3 IFPAGGDGLHLVVDESGNFKEENF---NTAMAVLSNAGEXXXX----XXXXXXXXXXXXN 161
+FP GG GL+LVVDE G F+E+NF SN +
Sbjct: 264 VFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQVDGRKGGGPKASGRIAKGGSASG 323
Query: 162 QTNIFNIVKMIMERNFAPVIIFSFSKKDCELYAMQMASI 278
++I+ IVKMIMER F PVIIFSFS+++CE +AM M+ +
Sbjct: 324 NSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMSKL 362
Score = 36.7 bits (81), Expect = 0.048
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +2
Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXVLMIXGXXILXIDSKVXP 691
LNMPA+TVVFT+ +K+ QMSGRA + I G ++ ID K P
Sbjct: 442 LNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRRG-KDIRGICVIMIDEKALP 498
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 51.2 bits (117), Expect = 2e-06
Identities = 29/79 (36%), Positives = 38/79 (48%)
Frame = +1
Query: 280 DFNTIEEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIEI 459
D + EK + + A L DR LPQV + PI+KE +E+
Sbjct: 747 DLTSNSEKSEIRLFCDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEM 806
Query: 460 LFGLGLIKALFATETXAMG 516
LF G+IK LF+TET AMG
Sbjct: 807 LFCRGVIKVLFSTETFAMG 825
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 33.9 bits (74), Expect = 0.34
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 433 PILKETIEILFGLGLIKALFATETXAMG 516
P+ K IE LF GL+K +FATET A G
Sbjct: 422 PLWKSFIEELFQRGLVKVVFATETLAAG 449
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXV 640
+NMPART V ++ K G + + QM+GRA + +
Sbjct: 450 INMPARTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGI 490
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXV 640
+N+PAR V+F RIG + R QMSGRA +T +
Sbjct: 871 VNLPARRVIFRQ----PRIGRDFIDGTRYKQMSGRAGRTGI 907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,405,897
Number of Sequences: 37544
Number of extensions: 383502
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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