Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D06_e428_08.seq
         (1518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05)                 101   2e-21
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            95   2e-19
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 31   1.8  

>SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05)
          Length = 415

 Score =  101 bits (242), Expect = 2e-21
 Identities = 51/92 (55%), Positives = 60/92 (65%)
 Frame = +3

Query: 3   IFPAGGDGLHLVVDESGNFKEENFNTAMAVLSNAGEXXXXXXXXXXXXXXXXNQTNIFNI 182
           I+PAGGDGL LVVDE G+F+EENF  AM V+   G                   +N F I
Sbjct: 226 IYPAGGDGLFLVVDEKGDFREENFQKAMGVIRVGG---GDPGAQRGRKGGTKGPSNTFKI 282

Query: 183 VKMIMERNFAPVIIFSFSKKDCELYAMQMASI 278
           VKMIMERNF PVIIFSFSKK+CE YA+QM+ +
Sbjct: 283 VKMIMERNFQPVIIFSFSKKECEAYALQMSKL 314


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 47/74 (63%), Positives = 55/74 (74%)
 Frame = +1

Query: 295 EEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIEILFGLG 474
           +EK LV+EVFNNA+D LS+ED+KLPQVE+V+P              PILKETIEILF  G
Sbjct: 2   QEKTLVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEG 61

Query: 475 LIKALFATETXAMG 516
           LIKALFATET A+G
Sbjct: 62  LIKALFATETFALG 75



 Score = 52.4 bits (120), Expect = 9e-07
 Identities = 43/123 (34%), Positives = 53/123 (43%)
 Frame = +2

Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXVLMIXGXXILXIDSKVXPXG 697
           LNMPARTVVF+N +KF    F         QMSGRA +   L   G  IL ID K+ P  
Sbjct: 76  LNMPARTVVFSNARKFDGKDFRFITSGEYIQMSGRAGRRG-LDERGIVILIIDEKMGP-D 133

Query: 698 RXKAWVXGKADXXXXXXXXXXXXMVXXLXSXSEGTHSLNXLIEXSFFPFSXXAXFXXXXK 877
             K  + G AD            MV  L    E    +  ++E SF+ F   A      +
Sbjct: 134 VGKGLLKGHAD-PLNSAFHLTYNMVLNLLRVEEINPEI--MLEKSFYQFQNYAAIPAMIE 190

Query: 878 KSK 886
           K K
Sbjct: 191 KMK 193


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 11/36 (30%), Positives = 26/36 (72%)
 Frame = +3

Query: 177 NIVKMIMERNFAPVIIFSFSKKDCELYAMQMASIGL 284
           +++ M+ +++  PV+ F+FS++ CE  A Q++++ L
Sbjct: 455 SLITMLEKKDKLPVVAFTFSRRKCEENADQLSNLNL 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,440,545
Number of Sequences: 59808
Number of extensions: 389398
Number of successful extensions: 1040
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)