Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D06_e428_08.seq
         (1518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    83   4e-16
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    53   5e-07

>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 41/80 (51%), Positives = 52/80 (65%)
 Frame = +1

Query: 277 LDFNTIEEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIE 456
           +DFN   EK +V  V+ +A+  LS ED+KLPQ+ N++P              PILKETIE
Sbjct: 396 MDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIE 455

Query: 457 ILFGLGLIKALFATETXAMG 516
           ILFG GL+K LFATET +MG
Sbjct: 456 ILFGEGLVKVLFATETFSMG 475



 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 28/89 (31%), Positives = 49/89 (55%)
 Frame = +3

Query: 3   IFPAGGDGLHLVVDESGNFKEENFNTAMAVLSNAGEXXXXXXXXXXXXXXXXNQTNIFNI 182
           I+P GG+G++ VV+  G F+E+ F  AM+ L+ AG+                  +N+  I
Sbjct: 306 IYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGD-SAGSFNKRRTGGGTQGDSNVLKI 364

Query: 183 VKMIMERNFAPVIIFSFSKKDCELYAMQM 269
           ++ +   +    I+FSFS+K+CE YA+ +
Sbjct: 365 IRSVASNDGLNCIVFSFSRKECESYAISL 393



 Score = 37.5 bits (83), Expect = 0.025
 Identities = 38/121 (31%), Positives = 49/121 (40%)
 Frame = +2

Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXVLMIXGXXILXIDSKVXPXG 697
           LNMPARTVVFT+ +KF              QM+GRA +       G  IL +DS +    
Sbjct: 476 LNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRG-KDDRGTVILMVDSAMS-AD 533

Query: 698 RXKAWVXGKADXXXXXXXXXXXXMVXXLXSXSEGTHSLNXLIEXSFFPFSXXAXFXXXXK 877
             K  + G  D            MV  L    EG  +++ +I  SF  F   A      K
Sbjct: 534 DAKQIIKGATD-PLNSQFRLTYNMVLNLMRV-EGM-AVSWIINNSFHQFQSYAKIPEIDK 590

Query: 878 K 880
           K
Sbjct: 591 K 591


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 53.2 bits (122), Expect = 5e-07
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = +1

Query: 277 LDFNTIEEKKLVDEVFNNAMDVLSEEDRKLPQVENVIPXXXXXXXXXXXXXXPILKETIE 456
           ++  T  EK+ V   F+  +  L   D++LPQV  +                PILKE +E
Sbjct: 585 MNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVE 644

Query: 457 ILFGLGLIKALFATETXAMG 516
           +LF  G +K LFATET AMG
Sbjct: 645 LLFQKGYVKILFATETFAMG 664



 Score = 33.1 bits (72), Expect = 0.53
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +2

Query: 518 LNMPARTVVFTNCQKFXRIGFXIYNIXRVXQMSGRAXKTXVLMIXGXXILXIDSKVXPXG 697
           +NMPAR VVF +  K       + N     QM+GRA +  + +     I+  DS V    
Sbjct: 665 VNMPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPD 724

Query: 698 RXKAWVXGKA 727
             K  + G+A
Sbjct: 725 VLKNLISGQA 734



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 159 NQTNIF-NIVKMIMERNFAPVIIFSFSKKDCELYAMQMASIGL 284
           N  NI+ N++  +   +  P+++F FS+K C+  A  +AS+ L
Sbjct: 545 NDKNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNL 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,657,309
Number of Sequences: 27780
Number of extensions: 311591
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)