Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D05_e420_07.seq
         (1484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   5.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   9.7  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 285 VG*GGASVIYRMPSPERQRL 226
           VG GG+S++YR+ SP+  RL
Sbjct: 322 VGKGGSSMVYRIFSPDNSRL 341


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 20   NRFLFLIFQFSICFVQFLFP 79
            NR+ F  F FS+CF   L P
Sbjct: 1499 NRYSFNFFLFSVCFQSLLIP 1518


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 1175 PXXXIXGXAPPXXXXTXRPXXSXXXPPPPPSP 1270
            P   I G  PP       P  +   PPPPP P
Sbjct: 753  PPAPIMGGPPPP---PPPPGVAGAGPPPPPPP 781



 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 1250 PPPPPSPXXXGRR 1288
            PPPPP+    G R
Sbjct: 779  PPPPPAVSAGGSR 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,762
Number of Sequences: 5004
Number of extensions: 48511
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)