Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D05_e420_07.seq
         (1484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0506 + 3701448-3701591,3702097-3702400,3702894-3703012,370...    25   8.2  
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475...    29   9.4  
11_01_0066 - 536281-537196,537397-537452                               29   9.4  
02_03_0367 + 18220099-18220905                                         29   9.4  

>01_01_0506 + 3701448-3701591,3702097-3702400,3702894-3703012,
            3703118-3703723
          Length = 390

 Score = 25.4 bits (53), Expect(2) = 8.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 1226 RPXXSXXXPPPPPSP 1270
            RP  S   PPPPP P
Sbjct: 231  RPAESFFQPPPPPPP 245



 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1250 PPPPPSPXXXG 1282
            PPPPP P   G
Sbjct: 241  PPPPPRPLDTG 251


>12_01_0582 -
           4752576-4752786,4752955-4753037,4753324-4753530,
           4755128-4755207,4756853-4756998,4757088-4757719
          Length = 452

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 198 LHNSLSMVLSDADVRVKAFCILPKPRLT 281
           L + L+++LS + V + A C+LPKP ++
Sbjct: 330 LQHVLAVLLSGSGVLIPAVCVLPKPEMS 357


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 1228 PXXXXSXPSPPPIPXXXGXPXPP 1296
            P    + P+PPPIP     P PP
Sbjct: 245  PTTTRASPTPPPIPTATVRPPPP 267


>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 1199 APPXXXXTXRPXXSXXXPPPPPSP 1270
            APP    + R       PPPPPSP
Sbjct: 136  APPSSSSSKRRDKGKRRPPPPPSP 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,173,414
Number of Sequences: 37544
Number of extensions: 487479
Number of successful extensions: 3858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3527
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4745262172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)