Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D05_e420_07.seq
         (1484 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   5.6  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   5.6  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   9.8  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = -1

Query: 890 GXXGGPXXXXPPXXXRGXXXXGXXSLGNXRGFPXAXAVCXXPGPXXLXXXXPXGPNLXPG 711
           G  G P    P     G    G   L    G+P        PGP         GP   PG
Sbjct: 107 GPKGNPGLRGPKGERGGMGDRGDPGLPGSLGYPGEKGDLGTPGPP--GYPGDVGPKGEPG 164

Query: 710 P 708
           P
Sbjct: 165 P 165


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 1250 PPPPPSPXXXGRR 1288
            PPPPPSP    RR
Sbjct: 1079 PPPPPSPRTERRR 1091


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 1250 PPPPPSPXXXGRRXXL 1297
            P PPPSP    RR  L
Sbjct: 1069 PSPPPSPRTAARRADL 1084


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,489
Number of Sequences: 2352
Number of extensions: 15849
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 173530665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)