Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D05_e420_07.seq
         (1484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    33   2.0  
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    33   2.0  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    33   2.0  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              33   2.0  

>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
           protein.
          Length = 1078

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 22/68 (32%), Positives = 23/68 (33%)
 Frame = -1

Query: 908 GATXWKGXXGGPXXXXPPXXXRGXXXXGXXSLGNXRGFPXAXAVCXXPGPXXLXXXXPXG 729
           GA   KG  G P    PP         G   +   RG P        PG   L    P G
Sbjct: 681 GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL--PGPPG 738

Query: 728 PNLXPGPP 705
            N  PGPP
Sbjct: 739 SNGNPGPP 746


>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
            protein.
          Length = 1466

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 22/68 (32%), Positives = 23/68 (33%)
 Frame = -1

Query: 908  GATXWKGXXGGPXXXXPPXXXRGXXXXGXXSLGNXRGFPXAXAVCXXPGPXXLXXXXPXG 729
            GA   KG  G P    PP         G   +   RG P        PG   L    P G
Sbjct: 828  GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL--PGPPG 885

Query: 728  PNLXPGPP 705
             N  PGPP
Sbjct: 886  SNGNPGPP 893


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
            alpha 1 chain protein.
          Length = 1466

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 22/68 (32%), Positives = 23/68 (33%)
 Frame = -1

Query: 908  GATXWKGXXGGPXXXXPPXXXRGXXXXGXXSLGNXRGFPXAXAVCXXPGPXXLXXXXPXG 729
            GA   KG  G P    PP         G   +   RG P        PG   L    P G
Sbjct: 828  GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL--PGPPG 885

Query: 728  PNLXPGPP 705
             N  PGPP
Sbjct: 886  SNGNPGPP 893


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 22/68 (32%), Positives = 23/68 (33%)
 Frame = -1

Query: 908  GATXWKGXXGGPXXXXPPXXXRGXXXXGXXSLGNXRGFPXAXAVCXXPGPXXLXXXXPXG 729
            GA   KG  G P    PP         G   +   RG P        PG   L    P G
Sbjct: 828  GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL--PGPPG 885

Query: 728  PNLXPGPP 705
             N  PGPP
Sbjct: 886  SNGNPGPP 893


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,117,577
Number of Sequences: 237096
Number of extensions: 2705071
Number of successful extensions: 11136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9736
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21978462734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)