Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D05_e420_07.seq
         (1484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    26   3.2  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    26   3.3  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   8.4  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
            cytoskeleton modulator)homolog protein 1, isoform b
            protein.
          Length = 781

 Score = 26.2 bits (55), Expect(2) = 3.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 1202 PPXXXXTXRPXXSXXXPPPPPSP 1270
            PP       P  S   PPPPP P
Sbjct: 615  PPPQSFGMAPISSAAPPPPPPPP 637



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1250 PPPPPSPXXXG 1282
            PPPPP P   G
Sbjct: 651  PPPPPPPSGAG 661


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
            cytoskeleton modulator)homolog protein 1, isoform a
            protein.
          Length = 607

 Score = 26.2 bits (55), Expect(2) = 3.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 1202 PPXXXXTXRPXXSXXXPPPPPSP 1270
            PP       P  S   PPPPP P
Sbjct: 441  PPPQSFGMAPISSAAPPPPPPPP 463



 Score = 22.6 bits (46), Expect(2) = 3.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1250 PPPPPSPXXXG 1282
            PPPPP P   G
Sbjct: 477  PPPPPPPSGAG 487


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical protein
            W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 1199 APPXXXXTXRPXXSXXXPPPPPSPXXXGRR 1288
            APP      RP  S    PPPP P    RR
Sbjct: 318  APPSSASNRRPVESSSRGPPPP-PSSSSRR 346


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical protein
            W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 1199 APPXXXXTXRPXXSXXXPPPPPSPXXXGRR 1288
            APP      RP  S    PPPP P    RR
Sbjct: 318  APPSSASNRRPVESSSRGPPPP-PSSSSRR 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,544,561
Number of Sequences: 27780
Number of extensions: 380521
Number of successful extensions: 1554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4266737980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)