Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D04_e412_08.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.56 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    29   1.3  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    29   1.7  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    29   1.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   5.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   9.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   9.2  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 325 RPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 176
           +P+ R+   +  QN S     L+   C   + +K GIE    W+ QSP A
Sbjct: 455 QPVTRDFL-LAAQNASGIYLNLNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 772 HFLTNRPKSAKSLIXQKNRPEIGLSGCSSLEQESTIKRT-WTXTSRGEKPSSGRWPLREP 948
           + L N  ++ KS I   N  +   SG  S + +S+++ + WT   + +KP   R    E 
Sbjct: 251 YLLKNDERNPKSDIKISNGIK---SGLDSFDDQSSVEASGWTEVGKNKKPVIARSATVER 307

Query: 949 SP*IKFLGXRCRKXL 993
           SP  +  G + R  L
Sbjct: 308 SPISQIFGGQLRSTL 322


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 821 RIDPR*G*VVVPVWNKSPLLKERGLQRQGAKNRLQGDGXYVNHHPKSSFWXR 976
           R DPR   +V PV       + RGL   G K+R  G G   N+ P+ + W R
Sbjct: 143 RRDPRINWIVNPVHKHR---ESRGLTSIGKKSRGIGKGHRFNNSPQHATWLR 191


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 821 RIDPR*G*VVVPVWNKSPLLKERGLQRQGAKNRLQGDGXYVNHHPKSSFWXR 976
           R DPR   +V PV       + RGL   G K+R  G G   N+ P+ + W R
Sbjct: 143 RRDPRINWIVNPVHKHR---ESRGLTSIGKKSRGIGKGHRYNNSPQHATWLR 191


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 760 VKSAHFLTNRPKSAKSLIXQKNRPEIGLSGCSSLEQESTIK 882
           VK   FLTN   +  SL+ Q NRP    S  S +E   TI+
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPSTLFS--SDIEYTPTIQ 713


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 522 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 686
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 687 SCA 695
           S A
Sbjct: 232 SDA 234


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 629 PPFASWRNSEEARTDRPSQQLRSLN 703
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,236,366
Number of Sequences: 5004
Number of extensions: 76294
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)