Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D04_e412_08.seq
         (1545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0416 - 17399059-17399777,17400560-17400704                       31   1.8  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.3  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    30   5.6  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   7.5  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   7.5  
06_03_0400 - 20420257-20421837                                         29   9.9  

>09_04_0416 - 17399059-17399777,17400560-17400704
          Length = 287

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 829 PEIGLSGCSSLEQESTIKRTWTXTSRGEKPSSGRWPLREP 948
           P +G  G  S E+   + R+W     GE+ ++ RW  R P
Sbjct: 184 PRVGQEGRPSKEEIRGVDRSWKKREAGEEGAAARWGERPP 223


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 546 ITIHWPSFYNVV-TGKTLALPNLIALQH 626
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = -3

Query: 313 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 134
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 133 PPIQRESTGNAYRRPLVADLVPNXLQPG 50
           PP  ++ST  + RRP     +    +PG
Sbjct: 62  PP--KDSTARSGRRPTEGRSITEGRRPG 87


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 608 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 706
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 608 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 706
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -3

Query: 244 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVADLVPN 65
           P R+GM   I+Y   W  +  PA+  ++  R+      P   ++   AY      DL  N
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRDFYAFMEPYVTKNPRQAYVNYRDLDLGVN 473

Query: 64  XLQPG 50
            ++ G
Sbjct: 474 AVEAG 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,947,485
Number of Sequences: 37544
Number of extensions: 603748
Number of successful extensions: 1390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)