Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D04_e412_08.seq
         (1545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111558-1|AAI11559.1|  302|Homo sapiens hypothetical protein LO...    33   2.8  
AK128598-1|BAC87522.1|  302|Homo sapiens protein ( Homo sapiens ...    33   2.8  
AY960854-1|AAX59055.1|  579|Homo sapiens keratinocyte proline-ri...    31   8.6  
AL353779-4|CAI20978.1|  579|Homo sapiens keratinocyte proline-ri...    31   8.6  

>BC111558-1|AAI11559.1|  302|Homo sapiens hypothetical protein
            LOC284837 protein.
          Length = 302

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 1047 PXXEGRXEXXGPG-LGPGXCTVXXRTHXAALMPRXGXXGPXGK 1172
            P  +G  +  GPG  G   C V   TH A L P  G   P GK
Sbjct: 74   PPLQGLGKAAGPGGTGQAECQVVVATHRANLKPWDGRAAPLGK 116


>AK128598-1|BAC87522.1|  302|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46757 fis, clone TRACH3023752. ).
          Length = 302

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 1047 PXXEGRXEXXGPG-LGPGXCTVXXRTHXAALMPRXGXXGPXGK 1172
            P  +G  +  GPG  G   C V   TH A L P  G   P GK
Sbjct: 74   PPLQGLGKAAGPGGTGQAECQVVVATHRANLKPWDGRAAPLGK 116


>AY960854-1|AAX59055.1|  579|Homo sapiens keratinocyte proline-rich
           protein protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -3

Query: 280 SNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRES 113
           ++RC R   S C  RRG K  IE      + SP   R V   R P+E  PPI+R S
Sbjct: 306 NSRCPRRPISSCSQRRGPKCRIE------ISSPCCPRQVPPQRCPVEI-PPIRRRS 354


>AL353779-4|CAI20978.1|  579|Homo sapiens keratinocyte proline-rich
           protein protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = -3

Query: 280 SNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRES 113
           ++RC R   S C  RRG K  IE      + SP   R V   R P+E  PPI+R S
Sbjct: 306 NSRCPRRPISSCSQRRGPKCRIE------ISSPCCPRQVPPQRCPVEI-PPIRRRS 354


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,745,258
Number of Sequences: 237096
Number of extensions: 3469266
Number of successful extensions: 10859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10843
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23074645414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)