Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D04_e412_08.seq
         (1545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    30   5.0  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    30   5.0  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 535 IGRIGYRAPPRVFFFFFYL 479
           IG  G+ APP VF FFF+L
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 535 IGRIGYRAPPRVFFFFFYL 479
           IG  G+ APP VF FFF+L
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 874 TIKRTWTXTSRGEKPSSGRWPLREPS 951
           +I RTW  +     P +GR+PL  PS
Sbjct: 397 SINRTWNSSMLDRAPRTGRFPLTSPS 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,484,104
Number of Sequences: 27780
Number of extensions: 473527
Number of successful extensions: 1050
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)