Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D03_e404_07.seq
         (1596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    71   2e-14
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   6.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   8.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 70.9 bits (166), Expect = 2e-14
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
 Frame = +3

Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
           EV V+G + P PI  FE +    ++ + +K  GY  PT IQ    P+ +SG++L+  AQT
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 591 GXGKTLAYILPAIVHI--NNQPP-----IPAVVMVLLH*XXAPTRELAHXIS 725
           G GKT A++LP I ++  +  PP         V+V++    +PTRELA  I+
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIM----SPTRELAIQIA 252


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = -2

Query: 470 VCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW*PIQD*FMRIIKIFVKWLERQRIPIRASH 291
           +C++ +FN+   F S ++  VF+  ++  +        + +  +FVK    + + I+ S 
Sbjct: 55  LCIWSIFNKWNQFRSYSNFSVFLFDIITIVTLTSTSILLIVNAVFVKEKRIRTLLIKLSE 114

Query: 290 I 288
           I
Sbjct: 115 I 115


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 530 YRGRIFVTHTFYCLTHIIWKVCLFKMFNRIRYF 432
           Y+G  +   TF CL  I W+  L  +  R   +
Sbjct: 519 YKGGKYRKVTFQCLKSIAWRAFLAVLKRRTEIY 551


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,360
Number of Sequences: 336
Number of extensions: 4139
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 48242175
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)