Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D03_e404_07.seq
(1596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 159 1e-39
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 97 6e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 90 9e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 79 2e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 5e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 61 5e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 61 5e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 6e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 8e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 60 8e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 1e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 56 1e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 55 3e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 7e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 53 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 2e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 6e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 0.002
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 37 0.007
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.036
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.036
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.048
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.083
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.44
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 1.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 7.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 159 bits (385), Expect = 1e-39
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
Frame = +3
Query: 288 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 467
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 468 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQ 647
FP+YV + +K +G++ PTPIQ Q WP+AMSG+++VG++ TG GKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 648 PPI-PAVVMVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
P + P ++L APTRELA I + + CV+ + L RG
Sbjct: 188 PLLSPGDGPIVL--VLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRG 245
Query: 825 XXNCXXXXPG 854
C PG
Sbjct: 246 VEIC-IATPG 254
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 97.1 bits (231), Expect = 6e-21
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 2/172 (1%)
Frame = +3
Query: 315 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 491
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 492 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVM 671
I S+GY+ PT IQAQ P SG++++GVA+TG GKT+A++LP HI +Q P+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 672 VLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVW-RXPLKXNXSXXLERG 824
+ PTRELA I R + L + C + P+K + L+RG
Sbjct: 492 PIAI-IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA-DLKRG 541
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.8 bits (213), Expect = 9e-19
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Frame = +3
Query: 399 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVG 578
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 579 VAQTGXGKTLAYILPAIVHINNQPPIPAVVMVL--LH*XXAPTRELAHXI 722
+A+TG GKT A+I+P I+ I+ PP+ M L APTRELA I
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQI 341
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.0 bits (186), Expect = 2e-15
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
F+E D +C+A + +G+K PTPIQ + P+ ++ ++++G+AQTG GKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 636 I-NNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCV 776
+ NN P AVV+ APTRELA+ IS + + S+ +
Sbjct: 108 LWNNPSPFFAVVL-------APTRELAYQISEQFEAIGGSIGVRSVVI 148
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 74.1 bits (174), Expect = 5e-14
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Frame = +3
Query: 396 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGK 566
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA WP ++G+
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Query: 567 NLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELA 713
++VG+A+TG GKT+A+ +PA+ ++N +V VL+ +PTRELA
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLV---VSPTRELA 249
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 60.9 bits (141), Expect = 5e-10
Identities = 32/104 (30%), Positives = 55/104 (52%)
Frame = +3
Query: 426 GVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKT 605
G+ + + F + N + +AI ++ PT +Q++ P+A+ GK+LV A+TG GKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 606 LAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
AY++P + + Q I + PTRELA + +L+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLE 109
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.9 bits (141), Expect = 5e-10
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Frame = +3
Query: 300 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPI----EHFEEA 467
P++ ++S Q FN D + S + E+ K+ G + + + F+
Sbjct: 209 PSFANISTQDFNSD----SAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSM 264
Query: 468 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQ 647
N + + + ++G++ PT IQ + P+A+ GK++VG A TG GKT A+I+P + + +
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 648 PPIPAVVMVLLH*XXAPTRELA 713
P VL+ PTRELA
Sbjct: 325 PKKVPTTRVLI---LCPTRELA 343
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 6e-10
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Frame = +3
Query: 384 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 563
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 564 KNLVGVAQTGXGKTLAYILPAI--VHINNQPPIPAVVMVLLH*XXAPTRELA 713
++++G A+TG GKTLA+++P I ++ P ++++ +PTRELA
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIII----SPTRELA 174
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.1 bits (139), Expect = 8e-10
Identities = 33/89 (37%), Positives = 48/89 (53%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
F+ N ++ A+ + G+K TP+QA P+ + K+LV A TG GKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 636 INNQPPIPAVVMVLLH*XXAPTRELAHXI 722
+ + + L+ APTRELA I
Sbjct: 63 VTRRDTDETGLGALI---VAPTRELATQI 88
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 60.1 bits (139), Expect = 8e-10
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +3
Query: 414 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTG 593
V VSG ++ P+ F ++ Q IK GY PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 594 XGKTLAYILPAI 629
GKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = +3
Query: 453 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV 632
+F+ + +AI G+K PTPIQ + P+ + G+++VG+A+TG GKT A+++P I
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 633 HINNQPPIPAVVMVLLH*XXAPTRELA 713
H+ + ++L +P RELA
Sbjct: 130 HLKSTLANSNTRALIL----SPNRELA 152
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.4 bits (130), Expect = 1e-08
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Frame = +3
Query: 309 DSLSLQPFNKDFYN--PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDY 482
D+L L N F N P S+ ++ +++ K + V+G +PIE F E
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTGNNPVDPIEEFPEG----I 56
Query: 483 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPA 662
+C+ +K + T IQ P S ++L+ A TG GKT+AY+ P + + Q +P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKL--QLHVPG 114
Query: 663 VVMVLLH*XXAPTRELAHXISR 728
++ APTREL I R
Sbjct: 115 GYRAII---VAPTRELCEQIYR 133
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 54.8 bits (126), Expect = 3e-08
Identities = 43/122 (35%), Positives = 60/122 (49%)
Frame = +3
Query: 357 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 536
K+ + S E ED N H V VS HF + P+ + K+ G+ P PIQ+
Sbjct: 100 KNYNEFSTLEEEDEHNSHGVDVSAWA------HFSLS--PEMLGSLSKA-GFSKPMPIQS 150
Query: 537 QGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAH 716
P A G +++G A TG GKTLA+ +P + H V +++ APTRELAH
Sbjct: 151 LVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVV----APTRELAH 206
Query: 717 XI 722
I
Sbjct: 207 QI 208
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 7e-08
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Frame = +3
Query: 402 NKHEVTVSGVEV---PNP----IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMS 560
NK+EV V ++ PN ++ FEE + + I SM ++ P+ IQ + P+ +S
Sbjct: 91 NKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLS 150
Query: 561 G--KNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXI 722
+N++G +Q+G GKT A+ L + ++ P P + + AP+RELA I
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL------APSRELARQI 200
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + I G++ P+PIQ + PIA+SG++++ A+ G GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
++ + I +++V PTRELA S++
Sbjct: 106 VDTKKSKIQTLILV-------PTRELALQTSQV 131
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/89 (34%), Positives = 49/89 (55%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
++HF E A+K+ + T IQ Q P A+ G++++G A+TG GKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 627 IVHINNQPPIPAVVMVLLH*XXAPTRELA 713
I ++ + + L +PTRELA
Sbjct: 98 IENLYRKKWTSLDGLGAL--VISPTRELA 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
F + ++ +K++ +PT IQ + G+N +G A+TG GKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 636 INNQPPIPAVVMVLLH*XXAPTRELA 713
+ P + ++L PTRELA
Sbjct: 69 WSKDP--SGIFALIL----TPTRELA 88
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 44.0 bits (99), Expect = 6e-05
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +3
Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
E+T S E N + FEE N + + + I + GY+ P+ +Q++ G++++ AQ+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQS 67
Query: 591 GXGKTLAYILPAIVHIN-NQPPIPAVVMVLLH*XXAPTRELAHXISRLL 734
G GKT + + + I+ + A+++ +PTRELA I ++
Sbjct: 68 GTGKTATFSIGILQSIDLSVRDTQALIL-------SPTRELAVQIQNVV 109
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/96 (25%), Positives = 50/96 (52%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
I+ F++ N + + I + G++ P+ IQ + + ++++ AQ+G GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 627 IVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLL 734
+ I+ + ++L APTRELA I +++
Sbjct: 78 LQKIDTS--LKQCQALIL----APTRELAQQIQKVV 107
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 37.1 bits (82), Expect = 0.007
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 504 MGYKDPTPIQAQGWPIAMS--GKNLVGVAQTGXGKTLAYILPAIVHINNQPP-IPAVVMV 674
M PT IQ+ P ++ K+ AQTG GKTLAY+LP + + P +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 675 LLH*XXAPTRELAHXI 722
+ APTREL I
Sbjct: 217 IYAVIMAPTRELCQQI 232
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.036
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 567 NLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLL 680
NL+ V TG GK+L++++PA++ Q P + MV L
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTL 1245
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.036
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 567 NLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLL 680
NL+ V TG GK+L++++PA++ Q P + MV L
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTL 1245
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.048
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 546 PIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
P+ G ++ A TG GKTL+Y++P IV + +P + V++ PTREL ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIP-IVQCLSHRTVPRLRCVVI----VPTRELTVQVA 222
Query: 726 RLLQXCXXXLXSPSMCVW 779
+ + +C W
Sbjct: 223 KTFEYYMSG-AGLQVCAW 239
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.5 bits (73), Expect = 0.083
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 423 SGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGW-PIAMSGKNLVGVAQTGXG 599
S ++ P E A+ ++ G++ TP+Q + + + +N V A+TG G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 600 KTLAYILPAIVHI-NNQPPIPA--VVMVLLH*XXAPTRELA 713
KTLA++L A + +P + + + V+L +PTRELA
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVIL----SPTRELA 125
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 555 MSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLL 680
+SGK++ + TG GK+L Y LPA++ + V+ LL
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLL 573
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -2
Query: 497 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 378
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 378 PYEVEDYRNKHEVTVSGVE-VPNPI 449
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,658,793
Number of Sequences: 5004
Number of extensions: 62567
Number of successful extensions: 227
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 901889170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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