Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D03_e404_07.seq
(1596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 5e-24
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 87 5e-17
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 83 6e-16
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 73 5e-13
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 1e-12
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 3e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 64 4e-10
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 60 4e-09
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 60 5e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 56 8e-08
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 1e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 54 4e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 51 3e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 51 3e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 51 3e-06
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 50 5e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 50 7e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 9e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 46 1e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 40 0.006
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.007
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 39 0.013
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 38 0.017
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 35 0.16
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 35 0.16
SB_19264| Best HMM Match : DUF1224 (HMM E-Value=6.2) 32 1.1
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 7.8
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 109 bits (263), Expect = 5e-24
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Frame = +3
Query: 300 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPD 479
P + +PFNK+FY H + +S E++D R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 480 YVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIP 659
+ +I+ + Y PT IQ Q PIA+SG++++G+A+TG GKT A++ PA+VHI +QP +
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 660 A--VVMVLLH*XXAPTRELAHXI 722
+VL+ APTREL I
Sbjct: 587 VGDGPIVLI---CAPTRELCQQI 606
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 86.6 bits (205), Expect = 5e-17
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +3
Query: 396 YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLV 575
+R ++ G +P PI ++EA PD + + + +GYKDPTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 576 GVAQTGXGKTLAYILPAIVHINNQPPIPA---VVMVLLH*XXAPTRELAHXI 722
GVA+TG GKT A+ +P +V I P I APTRELA I
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQI 194
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 83.0 bits (196), Expect = 6e-16
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Frame = +3
Query: 330 FNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMG 509
F +Y+ ++ V S V++ R K+ + + G + P PIE F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 510 YKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI-PAVVMVLLH* 686
++ PTPIQ Q MSG++++G+A+TG GKTLAY LP + + + P P V L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVAL-- 149
Query: 687 XXAPTRELAHXI 722
PTREL +
Sbjct: 150 ILTPTRELMQQV 161
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 73.3 bits (172), Expect = 5e-13
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Frame = +3
Query: 372 RSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPI 551
R +EV+ YR ++TV+G VP P+ FEE+ FPDY+ K G+ +PT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 552 AMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI-PAVVMVLLH*XXAPTRELAHXISR 728
+ILP IVHIN+QP + P ++L PTRELA +
Sbjct: 113 --------------------FILPGIVHINHQPLLQPGDGPIVL--VLCPTRELAQQVQE 150
Query: 729 LLQXCXXXLXSPSMCVWRXPLKXNXSXXLERGXXNCXXXXPG 854
+ S C++ K LERG C PG
Sbjct: 151 VAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEIC-IATPG 191
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 72.1 bits (169), Expect = 1e-12
Identities = 42/101 (41%), Positives = 54/101 (53%)
Frame = +3
Query: 420 VSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXG 599
VSG P I F E F + + I GY+ PTP+Q PI M+G++L+ AQTG G
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 600 KTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXI 722
KT AY+LP + + Q + A L APTRELA I
Sbjct: 529 KTAAYMLPVLTSLIKQ-GLNAPPRSPLALCVAPTRELAKQI 568
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 65.7 bits (153), Expect = 1e-10
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
EV VSG I FEEAN + ++ YK PTP+Q PI ++G++++ AQT
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 591 GXGKTLAYILPAIVHINN 644
G GKT A++LP + + N
Sbjct: 758 GSGKTAAFLLPVMTSMMN 775
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 64.1 bits (149), Expect = 3e-10
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +3
Query: 324 QPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIK 500
QPF KDFY + +P E +++R E + V G P P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 501 SMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
Y+ PTPIQAQ P+ MSG++++ + T
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 63.7 bits (148), Expect = 4e-10
Identities = 29/88 (32%), Positives = 50/88 (56%)
Frame = +3
Query: 345 YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 524
Y H ++ + +V+ R+K E+ V G V +P+ F +F + + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 525 PIQAQGWPIAMSGKNLVGVAQTGXGKTL 608
PIQ Q P+ +SG++++ A TG GK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 60.5 bits (140), Expect = 4e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVV 668
+A+ +G+ PTPIQA P+A+ GK++ A TG GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAI 82
Query: 669 MVLLH*XXAPTRELA 713
VL+ PTRELA
Sbjct: 83 RVLV---ITPTRELA 94
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 60.1 bits (139), Expect = 5e-09
Identities = 33/96 (34%), Positives = 52/96 (54%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
+E F + + G+ PT IQ QG P+A+SG++++G A+TG GKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 627 IVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLL 734
I + Q + L +PTRELA+ +L
Sbjct: 109 IETLWRQKWTSMDGLGAL--VISPTRELAYQTFEVL 142
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 56.0 bits (129), Expect = 8e-08
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
EV VSG I FEEAN + ++ YK PTP+Q PI ++G++++ AQT
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 591 GXGKT 605
G GKT
Sbjct: 181 GSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 55.2 bits (127), Expect = 1e-07
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
I FE+ + + + + GYK PTP+Q PI ++L+ AQTG GKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 627 IVHINNQ-PPIP 659
+ I + PP P
Sbjct: 934 LSRIYMEGPPAP 945
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 53.6 bits (123), Expect = 4e-07
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 396 YRNKHEVTVSGVEVPNPIEHF----EEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 563
+R++ + V G +VP+P+E F E FPDY+ ++ GY PTPIQ Q P+ G
Sbjct: 141 FRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLMAHG 200
Query: 564 KNLVG 578
G
Sbjct: 201 PKKSG 205
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 50.8 bits (116), Expect = 3e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +3
Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 590
EV + G P P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 591 GXGKTLAYILPAIVH 635
G GK LAY+LP I+H
Sbjct: 234 GSGKRLAYLLP-IIH 247
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.8 bits (116), Expect = 3e-06
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + I G+ P+PIQ + P+A++G++++ A+ G GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
+ + I A+V+V PTRELA S++
Sbjct: 109 TDTTKNCIQALVLV-------PTRELALQTSQI 134
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.8 bits (116), Expect = 3e-06
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + I G+ P+PIQ + P+A++G++++ A+ G GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
+ + I A+V+V PTRELA S++
Sbjct: 109 TDTTKNCIQALVLV-------PTRELALQTSQI 134
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 50.0 bits (114), Expect = 5e-06
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = +3
Query: 405 KHEVTVSGVEVPNPI---EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGK--N 569
KHEV V + +P+ + FEE + + + MG+ P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 570 LVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
++ +Q+G GKT A++L + ++ P P V+ + +PT ELA ++ +
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICL------SPTYELARQTGKVAE 194
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 49.6 bits (113), Expect = 7e-06
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 501 SMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQP-PIPAVVMVL 677
+MG K PT IQ P + G++ +G A+TG GKT A+ LP + + + P I AVV+
Sbjct: 24 AMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVL-- 81
Query: 678 LH*XXAPTRELAHXIS 725
PTRELA I+
Sbjct: 82 -----TPTRELAFQIA 92
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 49.2 bits (112), Expect = 9e-06
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 474 PDYVCQAIKSMGYKDPTPIQAQGWPIAMS-GKNLVGVAQTGXGKTLAYILPAIVHI 638
PD + +A+ G+ PTPIQ+ P A+ ++++G A+TG GKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
Q IK MG+ T IQ + + G++L+G A+TG GKTLA+++P +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 45.6 bits (103), Expect = 1e-04
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVV 668
+ +K MG P PIQ + P S K+L+ ++TG GK+L ++LP++ Q P
Sbjct: 173 EKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDPGRGYG 227
Query: 669 MVLLH*XXAPTRELA----HXISRLL 734
+++ PTRELA + +SRLL
Sbjct: 228 TIIV----VPTRELASQMLYEVSRLL 249
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 41.1 bits (92), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 546 PIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELA 713
P+ M GK++V +A+TG GKT A+++P + + ++L +PTRELA
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALIL----SPTRELA 364
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 40.3 bits (90), Expect = 0.004
Identities = 21/76 (27%), Positives = 43/76 (56%)
Frame = +3
Query: 507 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH* 686
G++ P+ IQ + + G++++ AQ+G GKT + + + I+ Q P +++
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVL---- 71
Query: 687 XXAPTRELAHXISRLL 734
+PTRELA+ I +++
Sbjct: 72 --SPTRELANQIQKVV 85
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 39.9 bits (89), Expect = 0.006
Identities = 19/75 (25%), Positives = 41/75 (54%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVV 668
+ + G++ P+PIQ + P+ G +L+ A++G GKT + + A+ ++ + ++
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENVITESNCIQII 85
Query: 669 MVLLH*XXAPTRELA 713
++ PTRE+A
Sbjct: 86 IL------TPTREIA 94
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.5 bits (88), Expect = 0.007
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 477 DYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
D V +A+ ++ PT IQ P + +++ AQTG GKTLAY+ P +VH
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVH 438
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 38.7 bits (86), Expect = 0.013
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 525 PIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTR 704
PIQA + G++++G A+TG GKTL++ LP + + + APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 705 ELAHXI 722
ELA +
Sbjct: 158 ELAKQV 163
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 38.3 bits (85), Expect = 0.017
Identities = 28/102 (27%), Positives = 47/102 (46%)
Frame = +3
Query: 375 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIA 554
+P + E +N TV+ + P+E P V +A+ +G+ Q Q
Sbjct: 481 APEDDEFLKNLSLDTVAQMAAGIPVE----TETPPEVYKALGQLGFSSFRAGQEQAVMRI 536
Query: 555 MSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLL 680
+SG + + V TG GK+L Y LPA ++ P + V+ L+
Sbjct: 537 LSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSPCLTLVISPLV 578
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 35.1 bits (77), Expect = 0.16
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 432 EVPNPIE--HFEEANFPDYVCQAIKSM-GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGK 602
EV PI + E D A++ + GY D P+Q Q ++ K+ + + TG GK
Sbjct: 108 EVAPPINTANIETDGSDDRALHALQHVFGYIDFRPMQRQAIDTLLAEKDSLILLPTGAGK 167
Query: 603 TLAYILPAIV 632
T+ Y +PA++
Sbjct: 168 TICYAIPALL 177
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 35.1 bits (77), Expect = 0.16
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +3
Query: 564 KNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
K+++G+A+TG GKT A+ LP + + + P ++L PTRELA IS
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQ-RLFALIL-----TPTRELAFQIS 49
>SB_19264| Best HMM Match : DUF1224 (HMM E-Value=6.2)
Length = 256
Score = 32.3 bits (70), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 461 RGKLSRLCVSSNKKYGLQRSYPYTGSRMANRYVREKLG--WCGPNRXRQNFGLYF 619
RGK ++S ++ L + PY S+ +N+ VRE L W P R Q FG+ +
Sbjct: 60 RGKFEFFGINSPQRKELSK--PYLSSKFSNQEVREFLKELWSSPERELQYFGIAY 112
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 29.5 bits (63), Expect = 7.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 1405 PSPPXXXXPPPTXLPXXPXSXPXPAAXS 1488
PSPP PP P P S P AA S
Sbjct: 309 PSPPNIAPSPPNTAPSPPHSDPIAAALS 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,698,258
Number of Sequences: 59808
Number of extensions: 507755
Number of successful extensions: 2976
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2919
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5235048542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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