Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D03_e404_07.seq
(1596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 148 9e-36
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 136 4e-32
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 136 4e-32
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 120 3e-27
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 109 7e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 109 7e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 109 7e-24
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 108 1e-23
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 107 2e-23
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 103 3e-22
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 87 4e-17
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 81 3e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 78 1e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 78 2e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 73 4e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 71 2e-12
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 67 3e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 3e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 67 3e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 62 1e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 61 2e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 2e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 60 4e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 59 9e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 2e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 58 2e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 58 2e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 56 5e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 56 9e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 1e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 55 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 2e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 54 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 54 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 54 3e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 8e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 52 8e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 52 8e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 52 8e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 52 1e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 52 1e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 52 1e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 51 2e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 50 3e-06
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 49 1e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 2e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 5e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 45 1e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 45 2e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 4e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 44 4e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 41 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.005
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 39 0.008
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 39 0.008
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 39 0.011
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 37 0.032
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 36 0.098
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 35 0.13
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 35 0.13
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 31 2.1
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 31 2.1
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 2.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 6.5
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 29 8.5
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 148 bits (359), Expect = 9e-36
Identities = 72/172 (41%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
Frame = +3
Query: 321 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIK 500
L PF K+FY +V + EVE+YR E+TV G ++P P++ F + FPDYV + +K
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 501 SMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIP----AVV 668
G+ +PTPIQ+QGWP+AM G++L+G+A+TG GKTL+Y+LPAIVH+N QP + +V
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIV 175
Query: 669 MVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
+VL APTRELA I + + C++ K L++G
Sbjct: 176 LVL-----APTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKG 222
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 136 bits (329), Expect = 4e-32
Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Frame = +3
Query: 318 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAI 497
+L F K+FY +V + +V YR + +++V G +VP P++ F++ANFPD + +AI
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 498 KSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI----PAV 665
+G+ +PTPIQAQGWP+A+ G++L+G+A+TG GKTLAY+LPA+VH++ QP + +
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 666 VMVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
V++L APTRELA I + S C++ K L RG
Sbjct: 241 VLIL-----APTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRG 288
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 136 bits (329), Expect = 4e-32
Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Frame = +3
Query: 318 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAI 497
+L F K+FY +V + +V YR + +++V G +VP P++ F++ANFPD + +AI
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 498 KSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI----PAV 665
+G+ +PTPIQAQGWP+A+ G++L+G+A+TG GKTLAY+LPA+VH++ QP + +
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 666 VMVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
V++L APTRELA I + S C++ K L RG
Sbjct: 241 VLIL-----APTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRG 288
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 120 bits (289), Expect = 3e-27
Identities = 58/137 (42%), Positives = 83/137 (60%)
Frame = +3
Query: 312 SLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQ 491
S+ +P NKDFY +S+ + E DYR + + VSG +V P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 492 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVM 671
AIK Y+ PT IQ Q PI +SG++++G+A+TG GKT A++LP IVHI +QP +
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301
Query: 672 VLLH*XXAPTRELAHXI 722
+ APTRELAH I
Sbjct: 302 P-IGVICAPTRELAHQI 317
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (261), Expect = 7e-24
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 530
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 531 QAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH---INNQPPIPAVVMVLLH*XXAPT 701
QAQ WPIAM G+++V +A+TG GKTL Y++P +H I N + ++VL +PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL-----SPT 239
Query: 702 RELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
RELA I C++ K LERG
Sbjct: 240 RELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (261), Expect = 7e-24
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 530
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 531 QAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH---INNQPPIPAVVMVLLH*XXAPT 701
QAQ WPIAM G+++V +A+TG GKTL Y++P +H I N + ++VL +PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL-----SPT 239
Query: 702 RELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
RELA I C++ K LERG
Sbjct: 240 RELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 109 bits (261), Expect = 7e-24
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +3
Query: 351 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 530
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 531 QAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH---INNQPPIPAVVMVLLH*XXAPT 701
QAQ WPIAM G+++V +A+TG GKTL Y++P +H I N + ++VL +PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL-----SPT 239
Query: 702 RELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
RELA I C++ K LERG
Sbjct: 240 RELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 108 bits (259), Expect = 1e-23
Identities = 53/136 (38%), Positives = 78/136 (57%)
Frame = +3
Query: 315 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 494
+ +PF K+FY K + + EV YR + E+ V G +VP PI+ + + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 495 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMV 674
+K + Y+ P PIQ Q PI MSG++ +GVA+TG GKTL ++LP + HI +QPP+ A
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 675 LLH*XXAPTRELAHXI 722
+ APTREL I
Sbjct: 604 -IGLVMAPTRELVQQI 618
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 107 bits (257), Expect = 2e-23
Identities = 53/136 (38%), Positives = 78/136 (57%)
Frame = +3
Query: 315 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 494
+ +PF K+FY K + + V YR + E+ V G +VP PI+ + + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 495 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMV 674
+K + Y+ P PIQAQ PI MSG++ +GVA+TG GKTL ++LP + HI +QPP+ A
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 675 LLH*XXAPTRELAHXI 722
+ APTREL I
Sbjct: 471 -IGLVMAPTRELVQQI 485
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 103 bits (247), Expect = 3e-22
Identities = 61/169 (36%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Frame = +3
Query: 333 NKDFYNPHKSVLDRSPY--EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSM 506
NK PH P+ VE YR +HEVT +G +P P FE + P + + + S
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSA 453
Query: 507 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV---HINNQPPIPAVVMVL 677
G+ PTPIQAQ WPIA+ +++V +A+TG GKTL Y++PA + H N V++L
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLIL 513
Query: 678 LH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXLERG 824
APTRELA I C++ K LERG
Sbjct: 514 -----APTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERG 557
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 86.6 bits (205), Expect = 4e-17
Identities = 36/97 (37%), Positives = 62/97 (63%)
Frame = +3
Query: 342 FYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDP 521
++ P V S +++ R + +TV+G ++P PI++F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 522 TPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV 632
TPIQ QG P+ +SG++++G+A TG GKTL ++LP I+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 80.6 bits (190), Expect = 3e-15
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = +3
Query: 399 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVG 578
R + + V+G ++P PI++F++ FP V +K G PTPIQ QG P+ ++G++++G
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 579 VAQTGXGKTLAYILPAIV 632
+A TG GKTL ++LP I+
Sbjct: 189 IAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 78.2 bits (184), Expect = 1e-14
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +3
Query: 396 YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLV 575
+R ++ G +P P+ +EE+ + +A++ GYK P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 576 GVAQTGXGKTLAYILPAIVHINNQPPIPA--VVMVLLH*XXAPTRELAHXI 722
G+A+TG GKT A++LP + +I+ PP+ APTRELA I
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQI 405
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 77.8 bits (183), Expect = 2e-14
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Frame = +3
Query: 333 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPN--PIEHFEEANFPDYVCQAIKSM 506
NK P K + E E + K VT GVE ++ F E+N P+ V K+
Sbjct: 75 NKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT- 133
Query: 507 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI---NNQPPIPAVVMVL 677
++ P+PIQ+ WP + G++L+G+A+TG GKTLA+ +PAI+H+ N + + +
Sbjct: 134 -FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNP 192
Query: 678 LH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVW 779
+PTRELA IS +L+ S+CV+
Sbjct: 193 TCLVLSPTRELAVQISDVLREAGEPCGLKSICVY 226
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 73.3 bits (172), Expect = 4e-13
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Frame = +3
Query: 333 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF----PDYVCQAIK 500
N+ NP K L+R R ++ + VSG +P P++ F E + Y+ + +
Sbjct: 99 NEIVENPKKE-LNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLA 157
Query: 501 SMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLL 680
+G+K+PTPIQ Q PI +SG+ A TG GKT A+I P ++ + +P + V+L
Sbjct: 158 ELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKL-KRPSTDGIRAVIL 216
Query: 681 H*XXAPTRELAHXISR 728
+P RELA +R
Sbjct: 217 ----SPARELAAQTAR 228
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 71.3 bits (167), Expect = 2e-12
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Frame = +3
Query: 495 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH---INNQPPIPAV 665
+ S G+ P+PIQAQ WPIAM +++V +A+TG GKTL Y++P +H I+N +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 666 VMVLLH*XXAPTRELAHXI 722
++VL +PTRELA I
Sbjct: 304 ILVL-----SPTRELATQI 317
Score = 35.9 bits (79), Expect = 0.074
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 390 EDYRNKHEVTVSGVEVPNPIEHFEEANFPD 479
E Y KHE+TVSG +VP P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 67.3 bits (157), Expect = 3e-11
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = +3
Query: 369 DRSPYEVEDYRNKHEV-TVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGW 545
+ + Y+ ED K TV GV + F E N + +A +++GYK PTPIQA
Sbjct: 141 EAAEYKPEDATPKPFFSTVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
Query: 546 PIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
P+A++G++L A TG GKT A+ LP + + +P VL+ PTRELA I
Sbjct: 199 PLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLI---LTPTRELAVQIH 255
Query: 726 RLLQ 737
++Q
Sbjct: 256 SMIQ 259
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 67.3 bits (157), Expect = 3e-11
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +3
Query: 288 NMRRPNWD--SLSLQPFNKDFYNPHKSVLDRSPYEVE-DYRNKHEVTVSGVEVPNPIEHF 458
N R WD + PF D P + ++ + D + SG VP P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 459 EEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI 638
E + + + I+ Y PTP+Q PI + G++L+ AQTG GKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 639 ----NNQPPIPAVVMVLLH*XXAPTRELAHXI 722
+ Q P + + L +PTRELA I
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 67.3 bits (157), Expect = 3e-11
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE N V AIK GYK PTPIQ + P+ +SG ++V +A+TG GKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 636 INNQPPIPAVVMVLLH*XXAPTRELA 713
+ P V ++L +PTR+LA
Sbjct: 90 LKQHVPQGGVRALIL----SPTRDLA 111
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 61.7 bits (143), Expect = 1e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 375 SPYEVEDYRNKHEVTVSGV--EVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWP 548
S ++ + R K ++ V G VP P+ F P + +++ GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 549 IAMSGKNLVGVAQTGXGKTLAYILPAI 629
A++GK+L+ A TG GKT ++++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 61.3 bits (142), Expect = 2e-09
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +3
Query: 384 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 563
EVE+ RN E E P + FEE + +A+ G + PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 564 KNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAH----XISRL 731
K++V A+TG GKTLAY+LP + + + + + P+REL +S L
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Query: 732 LQXCXXXL 755
++ C L
Sbjct: 144 IELCRVQL 151
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 61.3 bits (142), Expect = 2e-09
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = +3
Query: 288 NMRRPNWDSLSLQ--PFNKDFY-NPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 458
N R WD + PF D +P + + + E Y + + SG VP P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 459 EEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI 638
E + + + I+ Y PTP+Q PI +G++L+ AQTG GKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 639 NNQPPI--PAVV--MVLLH*XXAPTRELA 713
I P V + L +PTRELA
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELA 237
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 60.1 bits (139), Expect = 4e-09
Identities = 31/91 (34%), Positives = 52/91 (57%)
Frame = +3
Query: 453 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV 632
+FE ++ + K +G + PTP+Q P ++G++++G+AQTG GKT A+ LP I+
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-IL 117
Query: 633 HINNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
H + P +V+ PTRELA ++
Sbjct: 118 HRLAEDPYGVFALVV-----TPTRELAFQLA 143
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 58.8 bits (136), Expect = 9e-09
Identities = 38/110 (34%), Positives = 61/110 (55%)
Frame = +3
Query: 384 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 563
EVED + ++ + + + N + FE + D ++IK MG+ T IQA+ P M G
Sbjct: 135 EVEDKEEEKKLEETSI-MTN--KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG 191
Query: 564 KNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELA 713
++++G A+TG GKTLA+++PA+ + P +L PTRELA
Sbjct: 192 EDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVL--VICPTRELA 239
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.0 bits (134), Expect = 2e-08
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
++ F E + + +A + +G+K+P+ IQA+ P A+ GK+++G+AQTG GKT A+ +P
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 627 IVHI-----NNQP-----PIPAVVMVLLH*XXAPTRELAHXIS 725
+ + +++P P PA +L +PTRELA I+
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVL----SPTRELAIQIA 106
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 2e-08
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = +3
Query: 288 NMRRPNWD--SLSLQPFNKDF-YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 458
N R WD + PF D P + + + + Y + V SG +VP P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 459 EEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI 638
+ + D + I+ Y PTP+Q PI ++ ++L+ AQTG GKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 639 ----NNQPPIPAVVMVLLH*XXAPTRELA 713
+ + P + + +PTRELA
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 2e-08
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = +3
Query: 288 NMRRPNWD--SLSLQPFNKDF-YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 458
N R WD + PF D P + + + + Y + V SG +VP P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 459 EEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI 638
+ + D + I+ Y PTP+Q PI ++ ++L+ AQTG GKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 639 ----NNQPPIPAVVMVLLH*XXAPTRELA 713
+ + P + + +PTRELA
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 56.4 bits (130), Expect = 5e-08
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = +3
Query: 435 VPNPIEHFEEANFP--DYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTL 608
+ + F E P + + +A+ G++ TP+QA+ P S K++V A TG GKTL
Sbjct: 9 ITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTL 68
Query: 609 AYILPAIVHI---NNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
A++LP I I N+ PP P VM ++ +PTREL+ I ++ +
Sbjct: 69 AFLLPFIEIIRRSNSYPPKPHQVMGVI---ISPTRELSAQIHKVAE 111
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 55.6 bits (128), Expect = 9e-08
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +3
Query: 483 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHI---NNQPP 653
+ +A+ G++ TP+QA+ P S K++V A TG GKTLA++LP I I N+ PP
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 654 IPAVVMVLLH*XXAPTRELAHXISRL 731
P VM ++ +PTREL+ I ++
Sbjct: 88 KPHQVMGVI---ISPTRELSAQIHKV 110
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 55.2 bits (127), Expect = 1e-07
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI---- 656
+AIK G++ T +Q PI + GK+++ A+TG GKT+A++LPAI + PP
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 657 ---PAVVMVLLH*XXAPTRELA 713
P +V+V+ PTRELA
Sbjct: 455 RQPPIIVLVV-----CPTRELA 471
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 54.8 bits (126), Expect = 2e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
+ F + D + +K Y D T +Q+ P A+ G++++G A+TG GKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 627 I--VHINNQPPIPAVVMVLLH*XXAPTRELA 713
+ +H P V +++ +PTRELA
Sbjct: 130 LEKLHRERWSPEDGVGCIII----SPTRELA 156
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.8 bits (126), Expect = 2e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVV 668
Q + MG++ PT +QAQ P+ +SG++++ A TG GKT+AY+ P I H+ P
Sbjct: 43 QLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRS 102
Query: 669 MVLLH*XXAPTRELAHXISRLLQ 737
PTREL + L+
Sbjct: 103 HGTFALVIVPTRELCLQVYETLE 125
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.4 bits (125), Expect = 2e-07
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPI---- 656
+AIK GY+ T +Q PI + GK+++ A+TG GKT+A++LP+I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 657 --PAVVMVLLH*XXAPTRELAH 716
P ++ +++ PTRELA+
Sbjct: 127 KRPPILALVI----CPTRELAN 144
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 54.4 bits (125), Expect = 2e-07
Identities = 33/109 (30%), Positives = 58/109 (53%)
Frame = +3
Query: 387 VEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGK 566
+ED ++ + + G + + F+ + + AIK MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 567 NLVGVAQTGXGKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELA 713
+++G A+TG GKTLA+++PA+ + + P ++ PTRELA
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI--VICPTRELA 174
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 53.6 bits (123), Expect = 3e-07
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +3
Query: 417 TVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGX 596
+V+ VP + + P+++ ++ +G+ PT IQ + P +G++ + AQTG
Sbjct: 65 SVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGS 124
Query: 597 GKTLAYILPAIVHINNQ-PPIPAVVMVLLH*XXAPTRELAHXISRL 731
GKTL Y+L IN Q + AV++V PTREL ++++
Sbjct: 125 GKTLTYLLLIFSLINPQRSSVQAVIVV-------PTRELGMQVTKV 163
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 8e-07
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Frame = +3
Query: 375 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIA 554
S E + K ++ V VEV NP + + + +K+ G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 555 MSGKNLVGVAQTGXGKTLAYILPAIVHINNQPP----------IPAVVMVLLH*XXAPTR 704
+ G +LVG A+TG GKTLA++LP + + N P P+V+++L PTR
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL------PTR 184
Query: 705 ELAHXISRLLQXCXXXLXSPSMCVW 779
ELA ++ L S C++
Sbjct: 185 ELAKQVAADFDAYGGSLGLSSCCLY 209
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.4 bits (120), Expect = 8e-07
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
F++ + I+ G+K T +Q P+ + GK+++ A+TG GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 636 INNQPPI-------PAVVMVLLH*XXAPTRELA 713
+ PP P +V+V+ PTRELA
Sbjct: 142 VIKAPPASRDNRHPPIIVLVV-----CPTRELA 169
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.4 bits (120), Expect = 8e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + I G++ P+PIQ + PIA++G++++ A+ G GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 636 INNQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
I+ + V+++ PTRELA S++
Sbjct: 193 IDQDNNVIQAVIIV------PTRELALQTSQV 218
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.4 bits (120), Expect = 8e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + I G++ P+PIQ + PIA++G++++ A+ G GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 636 INNQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
I+ + V+++ PTRELA S++
Sbjct: 193 IDQDNNVIQAVIIV------PTRELALQTSQV 218
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 447 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
+E+F+E + V A++ + + PT IQ G P M K++V + TG GKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 627 I 629
+
Sbjct: 171 V 171
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 1e-06
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + + I G++ P+PIQ + PIA++G +++ A+ G GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
I+ N I A+++V PTRELA S++
Sbjct: 186 IDPNNNVIQAMILV-------PTRELALQTSQV 211
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 1e-06
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + + I G++ P+PIQ + PIA++G +++ A+ G GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
I+ N I A+++V PTRELA S++
Sbjct: 186 IDPNNNVIQAMILV-------PTRELALQTSQV 211
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +3
Query: 432 EVPNPI---EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGK 602
E+ +P+ + FEE PD + +++ G+ PT +Q+ P + G + V + TG GK
Sbjct: 101 EIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGK 160
Query: 603 TLAYILPAIVHI 638
TLAY+LP + I
Sbjct: 161 TLAYLLPILSEI 172
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 50.4 bits (115), Expect = 3e-06
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVH 635
FE+ + + I G++ P+PIQ + PIA++G +++ A+ G GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 636 IN-NQPPIPAVVMVLLH*XXAPTRELAHXISRL 731
I+ I AV++V PTRELA S++
Sbjct: 216 IDPENNVIQAVILV-------PTRELALQTSQV 241
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 48.8 bits (111), Expect = 1e-05
Identities = 30/98 (30%), Positives = 51/98 (52%)
Frame = +3
Query: 444 PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILP 623
PI+ F++ D V + + GYK P+ IQ + + G++++ AQ+G GKT + I
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT-SMIAI 78
Query: 624 AIVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
++ I N V+VL +P+RELA + +Q
Sbjct: 79 SVCQIVNISSRKVQVLVL-----SPSRELASQTEKTIQ 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 47.6 bits (108), Expect = 2e-05
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +3
Query: 483 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQ---PP 653
+ +A+ ++ TP+QA P+ S K++ A TG GKTLA+++P + + PP
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 654 IPAVVMVLLH*XXAPTRELAHXISRLLQ 737
P VM ++ +PTREL+ I + Q
Sbjct: 87 KPHQVMGVI---ISPTRELSTQIYNVAQ 111
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 46.4 bits (105), Expect = 5e-05
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 411 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM-SGKNLVGVAQ 587
E V E+P + + ++I + +K+PT IQ + +A GK+++G A+
Sbjct: 177 EEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAE 236
Query: 588 TGXGKTLAYILPAI 629
TG GKTLA+ LP +
Sbjct: 237 TGSGKTLAFGLPIL 250
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 45.2 bits (102), Expect = 1e-04
Identities = 29/82 (35%), Positives = 42/82 (51%)
Frame = +3
Query: 483 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPPIPA 662
+ +A+ S G + PIQ AM G++++G A+TG GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 663 VVMVLLH*XXAPTRELAHXISR 728
L APTRELA + +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK 196
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.8 bits (101), Expect = 2e-04
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Frame = +3
Query: 456 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV- 632
F E + + +A+K + P IQA + + GK+ + Q+G GKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 633 --------HINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQXC 743
H + P P V++++ PT ELA S++L C
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLV------PTAELA---SQVLANC 471
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 43.6 bits (98), Expect = 4e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 483 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAY---ILPAIVHINNQPP 653
+ +A+K G + PIQ AM G++++G A+TG GKTLA+ I+ I+ N +
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 654 IPAVVMVLLH*XXAPTRELAHXISR 728
L+ APTRELA + +
Sbjct: 187 RGKNPQCLV---LAPTRELARQVEK 208
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 43.6 bits (98), Expect = 4e-04
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 477 DYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINN 644
D V A++ G+ P+ QA P +SGK+++ A+TG GKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 41.1 bits (92), Expect = 0.002
Identities = 27/107 (25%), Positives = 52/107 (48%)
Frame = +3
Query: 417 TVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGX 596
T G+E PI F + + V + + G++ P+ IQ + + G++++ AQ+G
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 597 GKTLAYILPAIVHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
GKT + I ++ + + ++L +PTRELA + +Q
Sbjct: 84 GKT-SMIALSVCQVVDTSSREVQALIL-----SPTRELATQTEKTIQ 124
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.9 bits (89), Expect = 0.005
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +3
Query: 450 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
+ F+E+ +A+ + G T +Q + GK+ + A+TG GK++A++LPAI
Sbjct: 375 KRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Query: 630 VHI----NNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
+ N+ + V + + PTRELA I+
Sbjct: 435 ETVLKAMNSGKGVHKVAPIFVL-ILCPTRELASQIA 469
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 39.1 bits (87), Expect = 0.008
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +3
Query: 450 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
E F+ + + + I + G++ P+ IQ +G G +++ AQ+G GKT + +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 630 VHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
++ I +VL APTRELA I ++++
Sbjct: 99 QQLDFS-LIQCQALVL-----APTRELAQQIEKVMR 128
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.1 bits (87), Expect = 0.008
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +3
Query: 450 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
+ F+E+ +A+ + G T +Q + GK+ + A+TG GK++A++LPAI
Sbjct: 328 KRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
Query: 630 VHI----NNQPPIPAVVMVLLH*XXAPTRELAHXIS 725
+ N+ + V + PTRELA I+
Sbjct: 388 ETVLKAMNSGKGVNKVAPIFAL-ILCPTRELASQIA 422
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 38.7 bits (86), Expect = 0.011
Identities = 25/96 (26%), Positives = 48/96 (50%)
Frame = +3
Query: 450 EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
E F+ + + + I + G++ P+ IQ +G G +++ AQ+G GKT + +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 630 VHINNQPPIPAVVMVLLH*XXAPTRELAHXISRLLQ 737
+ + + +VL APTRELA I ++++
Sbjct: 99 QQL-DYALLQCQALVL-----APTRELAQQIEKVMR 128
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 37.1 bits (82), Expect = 0.032
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = +3
Query: 468 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQ 647
+ P + ++++ G PIQ A+ G++++ A+TG GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 648 ----PPIPAVVMVLLH*XXAPTRELAHXISRLLQXCXXXLXSPSMCVWRXPLKXNXSXXL 815
+ APTRELA + + ++ L ++CV+ L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLS--TVCVYGGVSYTIQQSAL 225
Query: 816 ERG 824
RG
Sbjct: 226 TRG 228
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 35.5 bits (78), Expect = 0.098
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = +3
Query: 474 PDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIVHINNQPP 653
PD + + I + G++ P+ IQ +G G +++ AQ+G GKT + + ++
Sbjct: 50 PDLL-RGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS-L 107
Query: 654 IPAVVMVLLH*XXAPTRELAHXISRLLQ 737
+ +VL APTRELA I ++++
Sbjct: 108 VQCQALVL-----APTRELAQQIEKVMR 130
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 35.1 bits (77), Expect = 0.13
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 489 QAIKSMGYKDPTPIQAQGW--PIAMSG--KNLVGVAQTGXGKTLAYILPAIVHINNQPPI 656
+A+++MG P+Q W I G +++ + TG GKTL+Y LP + + ++P
Sbjct: 34 KALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVR 93
Query: 657 PAVVMVLLH*XXAPTRELA 713
+V+L PTR+LA
Sbjct: 94 CLRALVVL-----PTRDLA 107
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 35.1 bits (77), Expect = 0.13
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 537 QGWPIAMSGKNLVGVAQTGXGKTLAYILPAI 629
Q P A++GK+L+ A TG GKT ++++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 288 NMRRPNWDSLSLQPF--NKDFYNPHKSVLDRSPYEVEDYR--NKHEVTVSGVEVPNPIEH 455
+MRRPN D+ +L+PF N+ F NP +S + +E+ R + E T G +V +
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 456 FEE 464
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 288 NMRRPNWDSLSLQPF--NKDFYNPHKSVLDRSPYEVEDYR--NKHEVTVSGVEVPNPIEH 455
+MRRPN D+ +L+PF N+ F NP +S + +E+ R + E T G +V +
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 456 FEE 464
EE
Sbjct: 811 NEE 813
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 492 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILP 623
A+K +G QA+ A++GKN+ T GK+L Y +P
Sbjct: 385 ALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 498 KSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV 632
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.1 bits (62), Expect = 8.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 507 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPA 626
G K P+Q Q +M K+ + TG GK+L Y LPA
Sbjct: 203 GNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPA 242
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 507 GYKDPTPIQAQGWPIAMSGKNLVGVAQTGXGKTLAYILPAIV 632
GY Q Q + + G + + V TG GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,136,443
Number of Sequences: 28952
Number of extensions: 364369
Number of successful extensions: 1623
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4308450624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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