Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D01_e388_07.seq
         (1578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    31   0.58 
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    29   2.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   7.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    27   9.4  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 378 LIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQK 557
           LI  +I++I +  +    +VKD S      +V + +L +L      V  V       R+K
Sbjct: 299 LIPGIIEFIRNSWSDACPVVKDGSNSPSASKVCRTVLSMLGLFTEQVFSVADEPNNHRKK 358

Query: 558 LSVVLRAVNR 587
           +S VLR +NR
Sbjct: 359 ISQVLRKINR 368


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 270 GSPTAPEIPPEEYSLNENEERAIIEPRSLEDPRVKELIQVLIDWINDELAPHRIIV 437
           G P A E+PP+++  + ++ +A++EP+         LI  LI WI D+ +   I V
Sbjct: 174 GRPVAFELPPDKF--HSDQSKALLEPKW---KTKNYLISHLIFWIIDQQSSSSIEV 224


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 SLNENEERAIIEPRSLEDPRV-KELIQVLIDWINDELAPH 425
           S N NE   +I P SL    V ++ I  L D++ D  APH
Sbjct: 234 SANSNEP-GVIGPNSLSRELVSRQTITTLTDYMTDSKAPH 272


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 461 IQVFTDVFDDYSVRGQLIVDPIDQYLY 381
           +++ +DV DD +V GQ+IV  + QY++
Sbjct: 82  VKLASDVPDDKNVTGQMIVKDMLQYIW 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,900,404
Number of Sequences: 5004
Number of extensions: 63745
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 889996126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)