Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D01_e388_07.seq
         (1578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145           33   0.47 
01_05_0073 - 17899175-17899756                                         31   3.3  
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    29   7.6  

>12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145
          Length = 432

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
 Frame = +3

Query: 288 EIPPEEYSLNENEERAIIEPRSLEDPRVKELIQVLID--------W-INDELAPHRIIVK 440
           ++ P+   L   E+ AI E       R+K+L+ +  D        W I  EL    + V 
Sbjct: 189 KVTPKMADLIAEEDAAIWENEPAIVKRLKKLLMLSTDGTLNMHALWLIRRELGDENLAVA 248

Query: 441 DISEDLYDGQVLQKLLEVLTETKLDV--PEVTQSEEGQRQKLSVVLRAVNRVLYGTSKPV 614
           D+ E        + L E  T+    +  P   + E+G R+KL    R      Y  ++  
Sbjct: 249 DVEEWRVKEYTEKWLAESETKYSFPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNELH 308

Query: 615 PKWSVDSVHCKHVVSILHLLVAL 683
           P  +V+ +  KH+V ILH L++L
Sbjct: 309 PIHNVEQLE-KHIVGILHELLSL 330


>01_05_0073 - 17899175-17899756
          Length = 193

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 25/86 (29%), Positives = 33/86 (38%)
 Frame = -1

Query: 666 AVSTRRACSAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPP 487
           ++   +  S+ S  S   P     T P  L   R+ ASD+A  Q    P   AW+R    
Sbjct: 57  SMKVEKRSSSESMSSKPSPS-ALPTRP-KLSGKRKAASDLAWRQGQWQPRPAAWARHAAT 114

Query: 486 GASGVLVRHTGLH*CL*RLFCEGPTH 409
            A    V H   H  L +L    P H
Sbjct: 115 TARDGFVAHVRHHCLLGKLIVGAPVH 140


>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 567 RQTASDVALLQTASPPARPAWSRSEPPGASG 475
           R+T SD   L   SPP RP   R+ PP   G
Sbjct: 2   RRTTSDDEALPRCSPPPRPRRCRARPPPPVG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,860,578
Number of Sequences: 37544
Number of extensions: 521030
Number of successful extensions: 1595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5104927520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)