Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D01_e388_07.seq
         (1578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39276| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   4e-23
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    40   0.004
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.022
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     37   0.039
SB_45718| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.051
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    34   0.36 
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.36 
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.63 
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  32   1.1  
SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5)            32   1.5  
SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)            31   1.9  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  31   1.9  
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)                    31   3.4  
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     31   3.4  
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)                     30   4.4  
SB_47480| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_24601| Best HMM Match : DUF934 (HMM E-Value=1.5)                    30   5.9  
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)                  29   7.7  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   29   7.7  

>SB_39276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score =  106 bits (255), Expect = 4e-23
 Identities = 48/85 (56%), Positives = 67/85 (78%)
 Frame = +3

Query: 234 VQAEGKFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLEDPRVKELIQVLIDWINDE 413
           ++ EGKFAI+SP +P    IPP+ Y ++ENEER +IEPRSLEDP+V +L  VL++WIN+E
Sbjct: 4   LETEGKFAIESPTTPIHM-IPPDTYDMDENEERFMIEPRSLEDPKVMQLKTVLLEWINEE 62

Query: 414 LAPHRIIVKDISEDLYDGQVLQKLL 488
           LA  RI+V+++ EDLYDG +L  L+
Sbjct: 63  LADKRIVVRNVEEDLYDGLILAHLM 87


>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 399 WINDELAPHRI---IVKDISEDLYDGQVLQKLLEVLTETKL 512
           W+N +LA H      +KD+  DL DG++L  LLEVLT  KL
Sbjct: 126 WVNSKLADHPTEPCTIKDVVTDLQDGRMLLNLLEVLTRKKL 166


>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 37.9 bits (84), Expect = 0.022
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = +3

Query: 348 RSLEDPRVKELIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKL 512
           ++L++ R+    +    W+N  L    + V D+ EDL DG++L  LLE+++  K+
Sbjct: 42  KTLKNERIFSQKKTFTKWVNSFLDKSGLHVNDLFEDLADGKILISLLEIISGEKI 96


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 37.1 bits (82), Expect = 0.039
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 429 IIVKDISEDLYDGQVLQKLLEVLTETKL 512
           ++V+D+ EDL DG VL  LLEVL  TKL
Sbjct: 46  VVVRDLVEDLRDGHVLLTLLEVLLNTKL 73


>SB_45718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 36.7 bits (81), Expect = 0.051
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +3

Query: 627 VDSVHCKHVVSILHLLVALARHF 695
           ++ +H K  V+ILHLLVALARHF
Sbjct: 7   LEGIHSKDTVAILHLLVALARHF 29


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 33.9 bits (74), Expect = 0.36
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 399 WINDEL--APHRIIVKDISEDLYDGQVLQKLLEVLTETKL 512
           WIN +L  A + + V D+  DL DG +L  LLEVLT  K+
Sbjct: 34  WINIQLSRAGNNVRVGDLFNDLKDGTILIALLEVLTGKKI 73


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 33.9 bits (74), Expect = 0.36
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 399 WINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKL 512
           W+N+ L    + + D+ E+L DG+ L  LLEVL   KL
Sbjct: 46  WVNNRLLKVGVRILDLYEELRDGENLLLLLEVLCNVKL 83


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 33.1 bits (72), Expect = 0.63
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +3

Query: 300 EEYSLNENEERAIIEPRSLEDPRVKELIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQ 479
           E+ S     ER+ I+  + E  RV++  +    WIN  L      V ++  DL DG+ L 
Sbjct: 19  EQQSAARLFERSRIKVLADERERVQK--KTFTKWINSHLQRVGARVNELYHDLQDGRKLI 76

Query: 480 KLLEVLTETKL 512
            LLEVL+  KL
Sbjct: 77  LLLEVLSGEKL 87


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 727  DXLRQAGPARGKCRASATSRCSIDTTCLQCTESTLHFGTGLDVP 596
            + +R+ G   G   +   +RC +    L C  STL+  TG++VP
Sbjct: 1108 EVVRETGAGFGPFISDLFTRCKVQKALLHCLVSTLYERTGINVP 1151


>SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5)
          Length = 529

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -1

Query: 708 DRRAESVARVRPAGAVSTRRACSAXSPRS--TSGPV*TFRTEPGSLLSTRQTASD-VALL 538
           + R  S  R   A   + R A S    +   T GP      +PG  L     ASD +   
Sbjct: 376 EERGASCRRFNRAKKEALRVAASCYRQQLPVTPGPS---EPQPGRRLRADDAASDGMPSA 432

Query: 537 QTASPPARPAWSRSEPPGASGVLVRHTGLH 448
            T +P +  AWS S   G +G+LV   GL+
Sbjct: 433 HTPAPESNSAWSASSIIGLAGLLVSLIGLY 462


>SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)
          Length = 213

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 627 RSTSGPV*TFRTEPGSLLSTRQTASDV-ALLQTASPPARPAWSRSEPPGASGVLVRHTGL 451
           R    PV    +EP      R  A D   +  T +P +  AWS S   G +G+LV   GL
Sbjct: 84  RVVQSPVAPGPSEPQGREGLRARADDAFGITHTPAPESNSAWSASSVIGVAGLLVSLFGL 143

Query: 450 H 448
           +
Sbjct: 144 Y 144


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 627 RSTSGPV*TFRTEPGSLLSTRQTASDV-ALLQTASPPARPAWSRSEPPGASGVLVRHTGL 451
           R    PV    +EP      R  A D   +  T +P +  AWS S   G +G+LV   GL
Sbjct: 809 RVVQSPVAPGPSEPQGREGLRARADDAFGITHTPAPESNSAWSASSVIGVAGLLVSLFGL 868

Query: 450 H 448
           +
Sbjct: 869 Y 869


>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 564 QTASDVALLQTASPPARPAWSRSEPPGASGVLVRHTGLH*C 442
           + A D  L  T  P +  AWS S   G +G+LV   GL+ C
Sbjct: 452 EDAFDTPLAHTPVPESNFAWSASSVIGVAGLLVSLIGLYTC 492


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 627  RSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVRHTGLH 448
            R    PV    +EP  L +     +   +  T  P +  AWS S   G +G+LV   GL+
Sbjct: 1546 RVAQSPVAPGPSEPQGLRADAAGTTSAGIEHTPVPESNSAWSASSVIGVAGLLVSLIGLY 1605


>SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)
          Length = 82

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 WINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKL 512
           WIN  L      V ++  DL DG+ L  LLEVL+  KL
Sbjct: 14  WINSHLQRVGARVNELYHDLQDGRKLILLLEVLSGEKL 51


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 591 EPGSLLSTRQTASDV-ALLQTASPPARPAWSRSEPPGASGVLVRHTGLH 448
           EP      R  A D   ++ T  P +  AWS S   G +G+LV   GL+
Sbjct: 675 EPQGREGLRARAEDAFGIMHTPEPESNSAWSASSVIGVAGLLVSLIGLY 723


>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 417

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = -1

Query: 651 RACSAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALL-----QTASPPARPAWSRSEPP 487
           R  +A   R T GP      +PG  L     AS  A        T +P +  AWS S   
Sbjct: 210 RVAAAQQLRVTPGPS---EPQPGRRLRADDAASGTASAGMPSAHTPAPESNSAWSASSII 266

Query: 486 GASGVLVRHTGLH 448
           G +G+LV   GL+
Sbjct: 267 GLAGLLVSLIGLY 279


>SB_47480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +3

Query: 243 EGKFA-IDSPGSPTAPEIPPEEYSLNE-------NEERAIIEPRSLEDPRVKEL 380
           EG FA ++SPG P   E PP  +S N        N    +++ R  E+P V +L
Sbjct: 40  EGAFARLESPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 93


>SB_24601| Best HMM Match : DUF934 (HMM E-Value=1.5)
          Length = 343

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 627 RSTSGPV*TFRTEPGSLLSTRQTASDV-ALLQTASPPARPAWSRSEPPGASGVLVRHTGL 451
           R    PV    +EP  L   R  A D   +  T +P +  AWS S   G +G+LV   GL
Sbjct: 71  RVAQSPVAPGPSEPQGL---RARADDAFGITHTPAPESNSAWSASSVIGVAGLLVSLIGL 127

Query: 450 H 448
           +
Sbjct: 128 Y 128


>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
          Length = 944

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -1

Query: 669 GAVSTRRACSAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEP 490
           GA ST+   SA  P ST        T P S  +    AS+   +      ARP  S   P
Sbjct: 559 GAASTKSGPSAAKPGSTKSAKSQANTRPASKSTPSGPASNNGTVAAKPSQARPLASAKRP 618

Query: 489 PGA 481
             A
Sbjct: 619 ASA 621


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 462 DGQVLQKLLEVLTETKLDVPEVTQSEEGQRQK--LSVVLRAVNRVLYGTSKPVPKWSVDS 635
           D  + Q+LLE   E   D+PE T  EE       L VV RA     +  S    K S D 
Sbjct: 261 DSDLCQELLEEALEALQDLPEATLFEESTVSPVWLEVVERATK---FLRSVVAGKGSEDR 317

Query: 636 VHCK 647
           V+CK
Sbjct: 318 VYCK 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,801,012
Number of Sequences: 59808
Number of extensions: 539870
Number of successful extensions: 3184
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5164621880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)