Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D01_e388_07.seq
(1578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arr... 134 1e-31
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 41 0.003
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 41 0.003
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 41 0.003
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 35 0.14
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 34 0.24
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 34 0.24
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 34 0.24
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 34 0.24
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 34 0.24
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 31 1.7
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 1.7
AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical... 31 2.2
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 6.8
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 6.8
U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical pr... 29 9.0
U40800-7|AAA81493.2| 343|Caenorhabditis elegans Hypothetical pr... 29 9.0
AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family ... 29 9.0
>AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arrest
at two-fold protein6 protein.
Length = 375
Score = 134 bits (325), Expect = 1e-31
Identities = 66/158 (41%), Positives = 102/158 (64%)
Frame = +3
Query: 222 EVQDVQAEGKFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLEDPRVKELIQVLIDW 401
EV +++ EG+ A+D P + L E E R + + D ++ +++ +LI W
Sbjct: 53 EVLELELEGREALDQSLVP----VLARNIWLEEGEIRRYLTKETARDQKLAQVVDLLIYW 108
Query: 402 INDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQKLSVVLRAV 581
+N+ELA RI+V+ + EDL+DGQ++QKLLE L + +++VPEV+QSEEGQRQKL +V++
Sbjct: 109 LNEELADQRIVVRHLQEDLFDGQIIQKLLEKLEQIRIEVPEVSQSEEGQRQKLQIVVQTA 168
Query: 582 NRVLYGTSKPVPKWSVDSVHCKHVVSILHLLVALARHF 695
NR+L G + KWS D +H K +I+ LLV LA H+
Sbjct: 169 NRIL-GQPREQEKWSADLIHQKDFTAIIQLLVLLALHY 205
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 348 RSLEDPRVKELIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEV 527
R+L+D RV + W N L + + D+ ED+ DG +L KLLE+++ KL P
Sbjct: 43 RTLQDERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGIMLMKLLEIISGDKLGKPNR 102
Query: 528 TQSEEGQRQKLSVVL 572
+ + + L+ VL
Sbjct: 103 GRMRVQKVENLNKVL 117
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 348 RSLEDPRVKELIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEV 527
R+L+D RV + W N L + + D+ ED+ DG +L KLLE+++ KL P
Sbjct: 43 RTLQDERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGIMLMKLLEIISGDKLGKPNR 102
Query: 528 TQSEEGQRQKLSVVL 572
+ + + L+ VL
Sbjct: 103 GRMRVQKVENLNKVL 117
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 348 RSLEDPRVKELIQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEV 527
R+L+D RV + W N L + + D+ ED+ DG +L KLLE+++ KL P
Sbjct: 43 RTLQDERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGIMLMKLLEIISGDKLGKPNR 102
Query: 528 TQSEEGQRQKLSVVL 572
+ + + L+ VL
Sbjct: 103 GRMRVQKVENLNKVL 117
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 35.1 bits (77), Expect = 0.14
Identities = 32/117 (27%), Positives = 59/117 (50%)
Frame = +3
Query: 381 IQVLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQKL 560
+ +WIN++L + +++D+++DL DG L KL+E+L + + +V + + QKL
Sbjct: 17 LHTFTNWINEQLQGN--VIRDLTQDLSDGVNLIKLVEIL-QGRRYYGKVYDQDPTEIQKL 73
Query: 561 SVVLRAVNRVLYGTSKPVPKWSVDSVHCKHVVSILHLLVALARHFPRAGPACRSXSP 731
V A++ + K V S D V + IL L+ L + + AC++ P
Sbjct: 74 MNVQMALDALREDGVKTVNIGSHDIVDGNEKL-ILGLIWCLVQRYQ---IACKTKIP 126
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 RSLEDPRVKELIQ--VLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVP 521
++L D R EL+Q W+N L V+D+ D+ DG++L +LL VL+ +L P
Sbjct: 32 KALADER--ELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKP 89
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 RSLEDPRVKELIQ--VLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVP 521
++L D R EL+Q W+N L V+D+ D+ DG++L +LL VL+ +L P
Sbjct: 32 KALADER--ELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKP 89
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 RSLEDPRVKELIQ--VLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVP 521
++L D R EL+Q W+N L V+D+ D+ DG++L +LL VL+ +L P
Sbjct: 32 KALADER--ELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKP 89
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 RSLEDPRVKELIQ--VLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVP 521
++L D R EL+Q W+N L V+D+ D+ DG++L +LL VL+ +L P
Sbjct: 32 KALADER--ELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKP 89
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 RSLEDPRVKELIQ--VLIDWINDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVP 521
++L D R EL+Q W+N L V+D+ D+ DG++L +LL VL+ +L P
Sbjct: 32 KALADER--ELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKP 89
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 399 WINDELAPHRII--VKDISEDLYDGQVLQKLLEVLTETKLDV 518
WIN L H ++D+ ED+ DG +L L+EVLT L V
Sbjct: 32 WINFHLEEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAV 73
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 399 WINDELAPHRII--VKDISEDLYDGQVLQKLLEVLTETKLDV 518
WIN L H ++D+ ED+ DG +L L+EVLT L V
Sbjct: 32 WINFHLEEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAV 73
>AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical
protein Y47D3A.27 protein.
Length = 370
Score = 31.1 bits (67), Expect = 2.2
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 156 KDDKEESFWDXXXXXXXXXXXXEVQDVQAEG-KFAIDSPGSPTAPEIPPEEYSLNENEER 332
K+D+EE +D +VQD +G +++ + E ++ SL + E
Sbjct: 98 KEDEEEGHFDETGNFIFDKKTKDVQDAWLDGIDWSLVKKKAGDQWEGDEDKKSLEDEEP- 156
Query: 333 AIIEPRSLEDPRVKELIQVLIDWINDELAPHRIIVKDISE 452
EP ++ D R KE+ + L++ L P++ + K +SE
Sbjct: 157 ---EPITMSDARKKEIFEQLVNL----LKPNQTVAKALSE 189
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 6.8
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 642 SAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVR 463
S+ + R T GP F + S+ Q + + TA P PAW + P A R
Sbjct: 2709 SSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYISTAPAPELPAWFWATCPSAK----R 2764
Query: 462 HTGLH 448
H+ +H
Sbjct: 2765 HSPVH 2769
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 6.8
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 642 SAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVR 463
S+ + R T GP F + S+ Q + + TA P PAW + P A R
Sbjct: 2709 SSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYISTAPAPELPAWFWATCPSAK----R 2764
Query: 462 HTGLH 448
H+ +H
Sbjct: 2765 HSPVH 2769
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 6.8
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 642 SAXSPRSTSGPV*TFRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVR 463
S+ + R T GP F + S+ Q + + TA P PAW + P A R
Sbjct: 2709 SSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYISTAPAPELPAWFWATCPSAK----R 2764
Query: 462 HTGLH 448
H+ +H
Sbjct: 2765 HSPVH 2769
>U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical
protein D2096.7b protein.
Length = 349
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 384 QVLIDWINDELAPHRIIVKDISEDLYD 464
+V+IDW+N ELA +I++ + + +D
Sbjct: 197 EVVIDWLNSELASSSLILRILKSNCHD 223
>U40800-7|AAA81493.2| 343|Caenorhabditis elegans Hypothetical
protein D2096.7a protein.
Length = 343
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 384 QVLIDWINDELAPHRIIVKDISEDLYD 464
+V+IDW+N ELA +I++ + + +D
Sbjct: 191 EVVIDWLNSELASSSLILRILKSNCHD 217
>AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family of
potassium channelsprotein 45, isoform a protein.
Length = 490
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 QVLQKLLEVLTETKLDVPEVTQSEEGQ--RQKLSVVLRAVNRVLYGT 602
+ L+ + E++ +D+ ++T + G+ QKL +LRA +R+L T
Sbjct: 83 ETLKSMNEIIKNETMDIIKITLTTNGEDRNQKLGDLLRAYHRILLET 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,144,354
Number of Sequences: 27780
Number of extensions: 411483
Number of successful extensions: 1326
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4566715120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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