Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D01_e388_07.seq
         (1578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45243.1 68414.m05188 DC1 domain-containing protein contains ...    34   0.30 
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    33   0.52 
At5g40450.1 68418.m04905 expressed protein                             31   1.6  
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    31   2.1  
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    31   2.8  
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf...    30   4.8  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    29   6.4  
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    29   8.4  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    29   8.4  

>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 263

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -1

Query: 318 HLNCILQV-VFQEP---WDFRGNQLQIYPQPEHLVLPXCASCDLWCQSCPRKILLCRL 157
           H+ C+L   ++ +P   W F G ++ + P  +H+  P C+ C      CP K  L RL
Sbjct: 196 HIICLLGWDLYMKPASSWIFYGKKVDVLPNNQHMSRPICSFCK---NRCPYKTFLIRL 250


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 33.1 bits (72), Expect = 0.52
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 327 LHFHLNCIL-QVVFQEP---WDFRGNQLQIYPQPEHLVLPXCASCDLWCQSCPRKILLCR 160
           +H H+ C+L + ++ +P   W      L I P    +  P C+SC      CP++I+L  
Sbjct: 393 VHLHITCMLGKDLYLKPRSSWSISRGSLLILPNFMGISRPICSSCH---NRCPQRIILVS 449

Query: 159 LS 154
           LS
Sbjct: 450 LS 451


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +3

Query: 228  QDVQAEGKFAIDSPGSPTAPEIPPEEYSLNEN--EERAIIEPRSLEDPRVKELIQVLIDW 401
            Q+ Q +G + +++     +    PE   L E   EER++I+P  L+ P ++   +VL + 
Sbjct: 896  QEGQVDGSYGLETKEETVSV---PESIELEEQPQEERSVIDPTPLQKPTLESPSEVLEE- 951

Query: 402  INDELAPHRIIVKDISEDLYDGQVLQKLLEVLTETKLDVPEVTQSEEGQRQKL 560
             + +    +I  K  S +L  G++ Q+   V   T L       +E+ +  KL
Sbjct: 952  -SSKTVDEKIEEKTDSIEL--GEIAQEERSVTDLTPLQEESSQPNEQEKETKL 1001


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 624 STSGPV*T-FRTEPGSLLSTRQTASDVALLQTASPPARPAWSRSEPPGASGVLVRHT 457
           S S PV + F +EPGS +S R T S ++   +      P WS      AS    + T
Sbjct: 164 SVSSPVGSEFGSEPGSPVSARSTKSSISRFASLGLSTSPRWSSKPKSTASSFNQKET 220


>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -1

Query: 318 HLNCIL-QVVFQEP---W---DFRGNQLQIYPQPEHLVLPXCASCDLWCQSCPRKILL 166
           H+ C+L Q ++ +P   W    F G ++ +     H+  P C+ C    + CP KI+L
Sbjct: 645 HIECLLGQDLYVKPGSSWISFSFNGEKIYVRANDHHMTRPICSHCK---KRCPHKIVL 699


>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 334

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 246 GKFAIDSPGSPTAPEIPPEEYSLNENEERAIIEPRSLE-DPRV 371
           G   +D P  P+ P  PPE+++++   +    EPR ++ +P +
Sbjct: 38  GLLTLDPPPPPSPPMTPPEKFTVDTKSKSIWSEPRVIKSEPEI 80


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 318 HLNCIL-QVVFQEP---WDFRGNQLQIYPQPEHLVLPXCASCDLWCQSCPRKILLCR 160
           H+ C++ + ++ +P   W F+G ++++      +  P C  C      CP KI+  R
Sbjct: 651 HIECLIGKDLYMKPGSSWLFKGRKVRVLRNNHRMTRPICRECK---DRCPHKIVFRR 704


>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 273 SPTAPEIPPEEYSLNENEERAIIEPRSLEDPRVKELIQVLIDWINDE--LAPHRIIVKDI 446
           +P+APE+    Y L+ N +   +   + E P VK + +V I+   +   L PH ++  D+
Sbjct: 206 APSAPEVGEFSYQLSYNVDGHTV---TYESPEVKRVCKVSIETPQENFMLIPHSLLRGDL 262

Query: 447 SE 452
            E
Sbjct: 263 LE 264


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 27/89 (30%), Positives = 41/89 (46%)
 Frame = -3

Query: 370 TLGSSRDLGSIIALSSFSFKLYSSGGISGAVGLPGESIANLPSA*TSCTSXMRFLRPMVP 191
           T G SR +  + +LS F+   Y++ G   +VGL  + I  LP+         R    M P
Sbjct: 50  TSGKSRKMKKM-SLSEFTTGAYTAPGGRNSVGLTQQEILQLPTG-----PRQRSEEEMQP 103

Query: 190 ILSQKDSSLSSFLGKTGVLGELGRGEDIS 104
              +     SS+ G++G  G +GR  D S
Sbjct: 104 --GRLGGGFSSYGGRSG--GRIGRDRDDS 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,881,517
Number of Sequences: 28952
Number of extensions: 371871
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4250619072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)