Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C12_e475_06.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    32   1.0  
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420     31   1.8  
01_01_0715 - 5542648-5543219,5543352-5543544                           31   3.2  
08_02_1035 - 23840606-23841109,23841194-23841199                       29   7.4  
12_02_1174 - 26696869-26698191                                         29   9.7  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    29   9.7  
05_01_0142 - 940421-940701,941262-941574                               29   9.7  

>01_06_0565 + 30287253-30287502,30287522-30289010,30289133-30289277,
            30289679-30289729
          Length = 644

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 19/70 (27%), Positives = 20/70 (28%)
 Frame = +2

Query: 1313 PXWGXXXXSPXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPPXXTX 1492
            P  G    +P G G     P   PP P  G           P   G  P P  G    T 
Sbjct: 264  PSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSPTT- 322

Query: 1493 XRAXGXXXPP 1522
                G   PP
Sbjct: 323  --PGGSYYPP 330


>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
          Length = 433

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = -2

Query: 1458 GXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXG 1312
            G  PR  G           PR GGGG   GG   G GP G     P+ G
Sbjct: 13   GGNPRGGGGGGPRGCGGGGPRSGGGGGPRGGG--GGGPRGSGSSKPRRG 59


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
 Frame = +2

Query: 1199 SGFKFXXLVPXXNGXXTAXPXXPXX----XXVSXP*KKPGGXP---XWGXXXXSPXGPGP 1357
            +G +   +V    G  TA P  P         + P  +P   P          +P  P P
Sbjct: 121  AGERLIVVVLAVRGNATATPTTPSPPPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVP 180

Query: 1358 XXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPG 1468
               P G  PPPP    G      S         P PG
Sbjct: 181  APAPAGSPPPPPPPPAGGNFTAPSPAGGMNFTAPAPG 217


>08_02_1035 - 23840606-23841109,23841194-23841199
          Length = 169

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -1

Query: 1516 GXAPXXA-GGGXXXGAXXGXWXXXPVXGXGG 1427
            G  P  A GGG   GA  G W   P  G GG
Sbjct: 11   GETPDAALGGGGDVGASVGDWEIDPGAGAGG 41


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +2

Query: 1349 PGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPPXXT 1489
            P P   PP   PPPP R           +P      P P   PP  T
Sbjct: 181  PPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPT 227


>11_04_0415 - 17395988-17396161,17397349-17397444,17397489-17398026,
            17398106-17398422
          Length = 374

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 20/56 (35%), Positives = 21/56 (37%)
 Frame = -2

Query: 1479 GGPXPGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXG 1312
            G P  G G  PR  G           PR  GGG  P G   G GP G     P+ G
Sbjct: 6    GNPRGGGGGGPRGFGGGGPRGFGGGGPRGFGGG-GPRGFG-GGGPRGFGGSKPRRG 59


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +2

Query: 1340 PXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPP 1480
            P  PG    PPG  PPPP    G         P   G  P PG  PP
Sbjct: 41   PPPPGAYPPPPGAYPPPP----GAYPPPPGAYPPQHG-YPQPGGYPP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,627,978
Number of Sequences: 37544
Number of extensions: 656892
Number of successful extensions: 2723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)