Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_C12_e475_06.seq
(1528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 32 1.4
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 32 1.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 1.8
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.6
SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09) 30 5.6
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 30 5.6
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 29 9.8
SB_11293| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +2
Query: 1304 GGXPXWGXXXXSPXGPGPX-XXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXP 1465
G P +G S GP P G PPPP R G P R P P
Sbjct: 179 GNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 233
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +2
Query: 1304 GGXPXWGXXXXSPXGPGPX-XXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXP 1465
G P +G S GP P G PPPP R G P R P P
Sbjct: 91 GNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 145
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.5 bits (68), Expect = 1.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 1428 PPXPXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
PP P G P PPPA G PPP
Sbjct: 297 PPPPSRGAPPPPPSRGSAPPPPPARMGTAPPP 328
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 1428 PPXPXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
PP P Q P PPP G PPP
Sbjct: 326 PPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPP 357
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +2
Query: 1295 KKPGGXPXWGX---XXXSPXGPGPXXXPPGXXPPPPXRGXG 1408
K PGG WG GP P G PPPP G G
Sbjct: 482 KVPGGGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQG 522
Score = 29.5 bits (63), Expect = 7.4
Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = -2
Query: 1479 GGPXP---GLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXGX 1309
GGP P G G P G P GGG PG GP P G P
Sbjct: 534 GGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPP--- 590
Query: 1308 PPG 1300
PPG
Sbjct: 591 PPG 593
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 30.7 bits (66), Expect = 3.2
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = -2
Query: 1521 GGXXXPXARXXVX--XGGPXPGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPG 1348
GG P R GGP PGL G P P G G PG PG
Sbjct: 371 GGGFIPTRRGVPNPRQGGPNPGLNNREPGRGNLGAPYQERPNPGPGLGRPNPGFGRPNPG 430
Query: 1347 P 1345
P
Sbjct: 431 P 431
Score = 29.5 bits (63), Expect = 7.4
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = -2
Query: 1479 GGPXPGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXG 1312
GGP PGLG GR P P G GG PG PG G P G
Sbjct: 499 GGPNPGLGGPNPGLGR-PNQGFGRPDP--GLGGPNPGLGGPNPGLGGPNPGTPDSG 551
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.3 bits (65), Expect = 4.3
Identities = 19/47 (40%), Positives = 19/47 (40%)
Frame = +2
Query: 1340 PXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPP 1480
P G GP PP PPPP G P RG P P GPP
Sbjct: 446 PQGGGPPQLPPN-LPPPPGGMRGMPPPPMGMYPPPRG-FPPPPFGPP 490
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 5.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1464 PXXAPXXXPPPAXXGAXPPP 1523
P AP PPPA A PPP
Sbjct: 58 PAAAPAAPPPPAAAPAAPPP 77
Score = 29.5 bits (63), Expect = 7.4
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 1428 PPXPXTGXXXQXP--XXAPXXXPPPAXXGAXPPP 1523
PP P P AP PPPA A PPP
Sbjct: 54 PPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPP 87
>SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09)
Length = 916
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 157 KNQVCLSXYALLNYSSDYDETVVYXXPSCRIXCS 56
K C S AL + SSD + T Y P C+ CS
Sbjct: 671 KTGSCYSNGALCSCSSDKERTCSYISPDCQCPCS 704
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGPGPXXXPPGXXPPPP 1393
PG WG GP P PPG PPPP
Sbjct: 201 PGQPGMWGPPPMG--GPPPMGGPPGGYPPPP 229
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 1304 GGXPXWGXXXXSPXGPGPXXXPPGXXPP 1387
G P G SP GP P PP PP
Sbjct: 2149 GPPPPMGPARHSPSGPSPLGAPPSVPPP 2176
>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 95 CGVXLXLVPNXLQPGGXH*XLERPPPRGS 9
CG L P L+PG LERPPPR S
Sbjct: 183 CGTPSYLAPEVLRPGDPL-VLERPPPRWS 210
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 29.1 bits (62), Expect = 9.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 1437 PXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
P T A PPPA A PPP
Sbjct: 152 PTTAATTPAAGAAAAAAPPPAAAAAAPPP 180
>SB_11293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 160 IYIEDKCNANGFLGSDCTM*LNCICFID*IIAQFLNL 270
+Y+EDK NG GS CT + CF+ I +Q NL
Sbjct: 265 LYVEDK---NGKNGSSCTRVSDARCFVMLIFSQDFNL 298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,098,057
Number of Sequences: 59808
Number of extensions: 658437
Number of successful extensions: 3112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2961
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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