Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_C12_e475_06.seq
(1528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 2.2
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 30 3.8
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 30 3.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 6.6
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 29 6.6
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.6
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 29 6.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 8.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 8.7
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 31.1 bits (67), Expect = 2.2
Identities = 28/99 (28%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Frame = +2
Query: 1226 PXXNGXXTAXPXXPXXXXVSXP*KK-PGGXPXWGXXXXSPXGPGPXXXPPGXXPPPPXRG 1402
P +G A P P P P G P P GPGP P G P P
Sbjct: 143 PGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGP 202
Query: 1403 XGXLXXXXSXRPXXRGXXPXPGXGPPXXTXXRAXGXXXP 1519
G + P G PG GP A G P
Sbjct: 203 PG-----PAGPPGNDGQPGQPG-GPGQDGASSAGGEAGP 235
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein 36
protein.
Length = 307
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/57 (28%), Positives = 20/57 (35%)
Frame = -2
Query: 1467 PGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXGXPPGF 1297
PG+ G+ P P G G P G PG G P+ PPG+
Sbjct: 251 PGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEPRTPPGY 307
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/57 (28%), Positives = 20/57 (35%)
Frame = -2
Query: 1467 PGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXGXPPGF 1297
PG+ G+ P P G G P G PG G P+ PPG+
Sbjct: 251 PGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEPRTPPGY 307
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 1428 PPXPXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
PP P TG P P PPP G PPP
Sbjct: 264 PPPPRTGS----PPPPPTGSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 1428 PPXPXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
PP P TG P P PPP G PPP
Sbjct: 285 PPPPRTGS----PPPPPTGSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 1428 PPXPXTGXXXQXPXXAPXXXPPPAXXGAXPPP 1523
PP P TG P P PPP G PPP
Sbjct: 270 PPPPRTGS----PPPPPTGSPPPPPAGGSPPP 297
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical protein
C02C6.1a protein.
Length = 830
Score = 29.5 bits (63), Expect = 6.6
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +2
Query: 1289 P*KKPGGXPXWGXXXXSPXGPGPXXXPPGXXPPPPXR---GXGXLXXXXSXRPXXRGXXP 1459
P +P P G P GP PP PPP G G RP G P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG--P 822
Query: 1460 XPGXGPP 1480
P PP
Sbjct: 823 PPNMAPP 829
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP GP PP PP P P P P GP
Sbjct: 172 PSGAPPSG----GPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAP-PSGGP 226
Query: 1478 P 1480
P
Sbjct: 227 P 227
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 397 PSGAPPSG----GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP-PSGGP 451
Query: 1478 P 1480
P
Sbjct: 452 P 452
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 412 PSGAPPSG----GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP-PSGGP 466
Query: 1478 P 1480
P
Sbjct: 467 P 467
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 427 PSGAPPSG----GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP-PSGGP 481
Query: 1478 P 1480
P
Sbjct: 482 P 482
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 442 PSGAPPSG----GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP-PSGGP 496
Query: 1478 P 1480
P
Sbjct: 497 P 497
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 232 PSGAPPSG----GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP-PSGGP 286
Query: 1478 P 1480
P
Sbjct: 287 P 287
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 322 PSGAPPSG----GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP-PSGGP 376
Query: 1478 P 1480
P
Sbjct: 377 P 377
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 1301 PGGXPXWGXXXXSPXGP-GPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGP 1477
P G P G P GP P PP PP P G P P P GP
Sbjct: 382 PSGAPPSG----GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP-PSGGP 436
Query: 1478 P 1480
P
Sbjct: 437 P 437
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Frame = +2
Query: 1304 GGXPXWGXXXXSPXGPGPXX---XPPGXXPPPP 1393
G P SP GP P PP PPPP
Sbjct: 299 GASPSVSPASTSPSGPAPSIPPPRPPALAPPPP 331
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.5 bits (63), Expect = 6.6
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +2
Query: 1289 P*KKPGGXPXWGXXXXSPXGPGPXXXPPGXXPPPPXR---GXGXLXXXXSXRPXXRGXXP 1459
P +P P G P GP PP PPP G G RP G P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG--P 822
Query: 1460 XPGXGPP 1480
P PP
Sbjct: 823 PPNMAPP 829
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate adaptor
protein CED-6 protein.
Length = 492
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Frame = +2
Query: 1304 GGXPXWGXXXXSPXGPGPXX---XPPGXXPPPP 1393
G P SP GP P PP PPPP
Sbjct: 299 GASPSVSPASTSPSGPAPSIPPPRPPALAPPPP 331
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 8.7
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = -1
Query: 1528 GPGGGXAPXXAGGGXXXGAXXGXWXXXPVXGXGGXXXXQXSXXXXXXXXXXXXXGXXGAG 1349
G GGG GGG G+ G G GG S G G G
Sbjct: 157 GGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGG 216
Query: 1348 SXGG 1337
S GG
Sbjct: 217 SSGG 220
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 8.7
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = -1
Query: 1528 GPGGGXAPXXAGGGXXXGAXXGXWXXXPVXGXGGXXXXQXSXXXXXXXXXXXXXGXXGAG 1349
G GGG GGG G+ G G GG S G G G
Sbjct: 157 GGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGG 216
Query: 1348 SXGG 1337
S GG
Sbjct: 217 SSGG 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,472,614
Number of Sequences: 27780
Number of extensions: 559947
Number of successful extensions: 1822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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