Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C12_e475_06.seq
         (1528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    32   0.87 
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    32   1.1  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    32   1.1  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    30   4.6  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    30   4.6  

>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein similar to
            ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = -2

Query: 1479 GGPXPGLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXG 1312
            GGP  G G  PR  G         P P   G G   GG   GPG  G     P  G
Sbjct: 37   GGPGRGYGGGPRVHGPGYGIGSRGPDP---GPGFFFGGAGPGPGYGGGGGHGPGYG 89


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
            similar to protein transport protein Sec24A
            (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 22/76 (28%), Positives = 23/76 (30%)
 Frame = +2

Query: 1301 PGGXPXWGXXXXSPXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPP 1480
            PGG P        P  P P    P   PPPP    G L    S RP         G  P 
Sbjct: 105  PGGAPF----QRFPSPPFPTTQNPPQGPPPPQTLAGHLSPPMSLRPQQPMAPVAMGPPPQ 160

Query: 1481 XXTXXRAXGXXXPPXS 1528
              T         PP +
Sbjct: 161  STTSGLPGANAYPPAT 176


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
            profile PF00917: MATH domain
          Length = 420

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -2

Query: 1464 GLGXXPRXXGRXXXXXXXNPXPRXGGGGXXPGGXXMGPGPXGXXXXXPQXG 1312
            G G  P   GR        P    GG G  PGG   GPG  G     P  G
Sbjct: 5    GCGGGPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG 55


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 17/64 (26%), Positives = 17/64 (26%)
 Frame = +2

Query: 1337 SPXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPPXXTXXRAXGXXX 1516
            SP  P     PP   P P               P      P PG  PP        G   
Sbjct: 448  SPPSPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPG-GS 506

Query: 1517 PPXS 1528
            PP S
Sbjct: 507  PPSS 510



 Score = 29.1 bits (62), Expect = 8.1
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +2

Query: 1301 PGGXPXWGXXXXSPXGPGPXXXPPGXXPPPPXRGXGXLXXXXSXRPXXRGXXPXPGXGPP 1480
            P   P  G    SP  P P   PP   P  P  G           P      P PG  PP
Sbjct: 459  PSTTPSPGSPPTSPTTPTPGGSPP-SSPTTPTPGGS---------PPSSPTTPTPGGSPP 508

Query: 1481 XXTXXRAXGXXXPPXS 1528
                  + G   P  S
Sbjct: 509  SSPTTPSPGGSPPSPS 524


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
            contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
            PF04815: Sec23/Sec24 helical domain and PF04810:
            Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 1298 KPGGXPXWGXXXXSPXGPGPXXXPPGXXPPPP 1393
            +PGG P  G     P GP     P G   PPP
Sbjct: 143  QPGGFPASGPPGGVPSGPPSGARPIGFGSPPP 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,592,851
Number of Sequences: 28952
Number of extensions: 490433
Number of successful extensions: 1437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)