Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C11_e467_05.seq
         (1505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12570| Best HMM Match : DUF922 (HMM E-Value=0.53)                   30   4.2  

>SB_12570| Best HMM Match : DUF922 (HMM E-Value=0.53)
          Length = 198

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 433 SSTVPVSILWIYEIELINSLTEQLLEDSSTFIIVF 329
           S TVP+S +W Y  E++  + EQ   +S T    F
Sbjct: 119 SQTVPLSNMWTYVREIVREILEQRSRNSRTMFAKF 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,000,524
Number of Sequences: 59808
Number of extensions: 538889
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)