Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C11_e467_05.seq
         (1505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical pr...    30   4.9  
Z92782-4|CAB07186.1|  367|Caenorhabditis elegans Hypothetical pr...    29   6.5  

>Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical
           protein ZK218.8 protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 173 HYGNAGTRRHLTSPSHYTVKVPSDF 247
           HY NAGT  ++ S  +YT+K+ + F
Sbjct: 50  HYVNAGTIEYMASEYNYTIKIKNHF 74


>Z92782-4|CAB07186.1|  367|Caenorhabditis elegans Hypothetical
           protein F14F8.5 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -2

Query: 454 LTYFLQTSSTVPVSILWIYEIELINSLTEQLLEDSSTFIIVF 329
           L++ +  +   P+S L +Y I+L NSL E +L D S + +VF
Sbjct: 89  LSFCIPVTCIPPLSYLEMYFIQLFNSL-EIILTDLSVWFVVF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,168,262
Number of Sequences: 27780
Number of extensions: 425854
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)