Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C11_e467_05.seq
         (1505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   3.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   9.1  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 125 RMVHRTKRQRWIDDVNHYGNAGTRRHLTSPSHYTVKVPS 241
           R    T R+R  D     G   +R H   PSHY  ++P+
Sbjct: 305 REYRETSRERSRD---RRGRGRSREHRIIPSHYIEQIPA 340


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 128 MVHRTKRQRWIDDVNHYGNAGTRRHLTSPSHYTVKVPSDFS 250
           M++      W+ D+  Y NA     +T  +  T+K   D S
Sbjct: 107 MLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,987
Number of Sequences: 438
Number of extensions: 5994
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)