Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C09_e451_05.seq
         (1577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   225   2e-59
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   224   2e-59
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   9.4  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  225 bits (549), Expect = 2e-59
 Identities = 106/175 (60%), Positives = 123/175 (70%)
 Frame = +3

Query: 84  ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 263
           ARP VS+YS K   V+  ++ LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQT
Sbjct: 4   ARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62

Query: 264 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 443
           SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH          
Sbjct: 63  SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRY 122

Query: 444 XXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRXIKAW 608
                           ARGH +E+IPE+PLVV D VQ   KTK+AV  L+ IKA+
Sbjct: 123 AISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177



 Score = 34.7 bits (76), Expect = 0.035
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = +1

Query: 613 DXLKVYKSQRLRAGKGKNAXSXSCXTQRTPLSXYNKDKGPDSCISETFLASRCXTXTX*N 792
           D +KV  S++LRAGKGK   +     +R PL  +N+D G                    N
Sbjct: 179 DVVKVANSRKLRAGKGK-LRNRRHVQRRGPLVVFNEDAGIVKAF-RNIPGVEIVNVRRLN 236

Query: 793 XLXLXPGXXSXXXYYLXQXPFXRLDPLXRS-WKXXQXKKXLXLP 921
            L L PG          +  F  LD +  S  +  Q KK   LP
Sbjct: 237 LLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLP 280


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  224 bits (548), Expect = 2e-59
 Identities = 106/175 (60%), Positives = 123/175 (70%)
 Frame = +3

Query: 84  ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 263
           ARP VS+Y+ K   V+  +L LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQT
Sbjct: 4   ARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQT 62

Query: 264 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 443
           SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH          
Sbjct: 63  SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRY 122

Query: 444 XXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRXIKAW 608
                           ARGH +E+IPE+PLVV D VQ   KTK+AV  L+ IKA+
Sbjct: 123 AIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177



 Score = 34.7 bits (76), Expect = 0.035
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = +1

Query: 613 DXLKVYKSQRLRAGKGKNAXSXSCXTQRTPLSXYNKDKGPDSCISETFLASRCXTXTX*N 792
           D +KV  S++LRAGKGK   +     +R PL  +N+D G                    N
Sbjct: 179 DVIKVANSRKLRAGKGK-LRNRRHVQRRGPLVVFNEDTGIVKAF-RNIPGVEIVNVRRLN 236

Query: 793 XLXLXPGXXSXXXYYLXQXPFXRLDPLXRS-WKXXQXKKXLXLP 921
            L L PG          +  F  LD +  S  +  Q KK   LP
Sbjct: 237 LLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLP 280


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 193 SLTRSGLMGALNTNGRGSEAPATTSLF 113
           S T SGL GA NTN +   +   T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,847
Number of Sequences: 5004
Number of extensions: 51168
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 889996126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)