Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C09_e451_05.seq
         (1577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   205   8e-53
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    32   1.3  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    32   1.3  
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   3.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  205 bits (500), Expect = 8e-53
 Identities = 97/175 (55%), Positives = 118/175 (67%)
 Frame = +3

Query: 84  ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 263
           ARPLV+VY EK E    + + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 264 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 443
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 444 XXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRXIKAW 608
                          QARGH+++++ E+PLVVSDKV+   KTK+AV+FLR    W
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLW 176


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 181 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATLVP 71
           SG++G  N NG GS +P+T++   +Y    GR  + P
Sbjct: 14  SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGRTWIHP 50


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 181 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATLVP 71
           SG++G  N NG GS +P+T++   +Y    GR  + P
Sbjct: 14  SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGRTWIHP 50


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 216 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 386
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 387 PTKP 398
             KP
Sbjct: 197 APKP 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,148
Number of Sequences: 27780
Number of extensions: 331982
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4566715120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)