Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C08_e443_06.seq
         (1508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932     30   4.1  
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    30   5.5  
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023...    29   9.6  

>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
          Length = 219

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 567 ARITRLWTWVRTHMYNSKISPXXF 638
           A +  +WT V TH YNS ISP  +
Sbjct: 95  AAMVDVWTEVETHQYNSAISPIVY 118


>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100 QEIIQITSYSE*LHCC-ECPKWI*YNTLYLGNFVYWL 207
           Q +I++  Y    HC   C  W+ +NTL+  +F YW+
Sbjct: 53  QIVIKLYQYH---HCSPSCTSWVIFNTLFGLSFTYWM 86


>07_03_1053 -
           23600983-23601550,23601947-23602105,23602192-23602357,
           23602959-23603502,23604506-23604679,23605740-23605985
          Length = 618

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +1

Query: 688 PGQLPXPRVXXTCXXXPXGVXPVALLSEPVLPGXVXYXPGP 810
           P +LP  R    C   P G  P ALL  PVL       P P
Sbjct: 49  PARLPISR--EPCLTIPAGFSPSALLESPVLLTNFKVEPSP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,237,898
Number of Sequences: 37544
Number of extensions: 382841
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)