Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C08_e443_06.seq
         (1508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.7  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   9.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   9.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 271
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 127 TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 271
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 127 TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 271
           T +IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 66  TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 105


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 261 KLCVYKVILLVY*LTNYIKPVYKI 190
           K CV K I ++     Y++PVYK+
Sbjct: 70  KACVMKRIEMLKGTELYVEPVYKM 93


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 261 KLCVYKVILLVY*LTNYIKPVYKI 190
           K CV K I ++     Y++PVYK+
Sbjct: 70  KACVMKRIEMLKGTELYVEPVYKM 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,761
Number of Sequences: 438
Number of extensions: 4994
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52754625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)