Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C07_e435_05.seq
         (1542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   8.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   8.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   8.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 188 GEALLHAYTASGLGRCGHRDEGTLHPP 268
           G   +  Y+A G+    H++ G  HPP
Sbjct: 335 GTYQMTGYSAMGMAAPHHQNFGPRHPP 361


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 82  LGKKAANRAETAPGLEPNVARPPP 11
           +    A     +P ++  VARPPP
Sbjct: 96  MSSPGAGSGNLSPQIQTQVARPPP 119


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 82  LGKKAANRAETAPGLEPNVARPPP 11
           +    A     +P ++  VARPPP
Sbjct: 96  MSSPGAGSGNLSPQIQTQVARPPP 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,119
Number of Sequences: 336
Number of extensions: 2746
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46398525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)