Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C07_e435_05.seq
         (1542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    99   8e-22
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   5.2  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   9.1  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score =   99 bits (238), Expect = 8e-22
 Identities = 48/116 (41%), Positives = 71/116 (61%)
 Frame = +3

Query: 3    LFLGGGRATLGSSPGAVSALLAAFFPKFPTHSEDNRYHLQAFRHLYVLAVEPRLILPRDL 182
            L LGGGR +L  S  A++ALL +F+P+FP  ++DNR HLQA R+L+ LAVE R I+PR+ 
Sbjct: 1199 LSLGGGRYSLSRSNLAIAALLISFYPQFPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258

Query: 183  DTGKLCYTHIQLVDLEGVVTEMKAPCILPELERLREVRINDPRYWPITFQRGRNWD 350
            DT + C   + +V   G V +++AP +LP  + +  V     +YW +      N D
Sbjct: 1259 DTKQPCIVPLNVVQKSGAVQKLEAPILLPPYDSISSVSTLGDKYWNLKIDLDNNSD 1314


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 28   RWVRVRARSRLCWPLSSLNSRH----IVRITDITFKRSDICTCSP 150
            +W R   R R  +P+  L  R     + R+ D    ++  CTCSP
Sbjct: 971  KWDRPYTRERAVYPVPLLKERKFWPSVARLDDAYGDKNLFCTCSP 1015


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 240 TEMKAPCILPELERLREVRINDPRYWPIT 326
           TE     I+ +++RL E R+N+P  +P++
Sbjct: 493 TERIKNSIILDMQRLEEERLNEPSIYPVS 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,575
Number of Sequences: 5004
Number of extensions: 43462
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 866210038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)