Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C07_e435_05.seq
         (1542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    87   3e-17
01_01_0004 + 15599-15976,16383-16474,16558-17258,17501-17571,179...    31   1.8  
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175...    30   4.3  
01_06_0998 + 33685051-33685143,33685231-33685322,33685490-336855...    30   4.3  
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706     29   9.8  

>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
            16619577-16619848,16620528-16620633,16620715-16620872,
            16621527-16621714,16621786-16621855,16622814-16622984,
            16624363-16624838,16625625-16625871,16626158-16626490,
            16627329-16627412,16627751-16627843,16627966-16628025,
            16628582-16628680,16628830-16628970,16629207-16629287,
            16629895-16629966,16631160-16631231,16632083-16632176,
            16632257-16632339,16632455-16632532,16632914-16632970,
            16633055-16633132,16633236-16633357,16633463-16633623,
            16634419-16634495,16634570-16634683,16634857-16634958,
            16635368-16635436,16635437-16635577,16635936-16636109,
            16636934-16637063,16637137-16637276,16637369-16637446,
            16637813-16637911,16638408-16638803
          Length = 1749

 Score = 87.4 bits (207), Expect = 3e-17
 Identities = 67/186 (36%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
 Frame = +3

Query: 3    LFLGGGRATLGSSPGAVSALLAAFFPKFPTHSEDNRYHLQAFRHLYVLAVEPRLILPRDL 182
            LFLGGG  T  +S  AV+ALL   +P+ PT   DNR HLQAFRHLYV+A EPR I   D+
Sbjct: 1372 LFLGGGTHTFSTSNSAVAALLITLYPRLPTGPNDNRCHLQAFRHLYVIATEPRWIQTVDV 1431

Query: 183  DTGKLCYTHIQLVDLEGVVTEMK-----APCILPE----------------------LER 281
            DTG   Y  +++   E    +        PC+LPE                      L +
Sbjct: 1432 DTGLPVYCPLEVTVAETEYYDETNYCEVTPCLLPERSVVYTQTGFLSNELHNLKRLFLLQ 1491

Query: 282  LREVRINDPRYWP--ITF-QRGRNW----DQLXIFLKYTWCVDVKQRTGCLSYLDDPQGF 440
            L+ +R+  PRYW   IT     + W    D+   F      + +K++ G  SY DDP G 
Sbjct: 1492 LKNIRVCGPRYWSQVITLTPEDKPWWKSGDRTDPF--NGGVLYIKRKVGSCSYSDDPIGC 1549

Query: 441  LTXLSQ 458
             + LS+
Sbjct: 1550 QSLLSR 1555


>01_01_0004 +
           15599-15976,16383-16474,16558-17258,17501-17571,
           17968-18057,18142-18321,18531-18593
          Length = 524

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +3

Query: 258 CILPELE-RLREVRINDPRYWPITFQRG--RNWDQLXIFLKYTW 380
           C++ + E R++++R  D R   I  +R   +NWD++  F+ YTW
Sbjct: 410 CLMAQCEARIKKLRDEDSRMLKILRKRRAQQNWDKVRKFVMYTW 453


>04_04_1310 -
           32517074-32517193,32517295-32517360,32517468-32517558,
           32517741-32517870,32517944-32518032,32518300-32518376,
           32518539-32518607,32518800-32518874,32519040-32519135,
           32519232-32519396
          Length = 325

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 30  LGS-SPGAVSALLAAFFPKFPTHSEDNRYHLQAFRHLYVLAVEPRLILPRDLDTGKLCYT 206
           +GS SPG + A + AF   FP + E    H  A  H  V  +    IL   LD GK    
Sbjct: 155 IGSISPGLLQAAIGAFSTVFPDYQERIARHEAA--HFLVAYLIGLPILGYSLDIGK---E 209

Query: 207 HIQLVD 224
           H+ L+D
Sbjct: 210 HVNLID 215


>01_06_0998 +
           33685051-33685143,33685231-33685322,33685490-33685587,
           33686671-33686826,33686927-33687546,33687888-33687958,
           33688072-33688326,33688426-33688543,33688671-33688842,
           33688928-33689469
          Length = 738

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 460 VWESXVRKPWGSSR*ERQPVRCFTSTHHVYFRKIXSWSQFRPLWKVIGQY 311
           V++S ++ P G       P   F +T  V   K+      RPLWKV G+Y
Sbjct: 661 VYQSAIQSPLGVKIDVEPPTLVFNATKKVNTFKVS----MRPLWKVQGEY 706


>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
          Length = 265

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = -2

Query: 494 RGPHVRFVQGXSLGEXSQEALGVVQVGEAASALFHVNAPRVLQENXELVPVPSPLESDRP 315
           RG H+      S G  S  AL V +   A +   H +    +    EL+P    L  D  
Sbjct: 187 RGCHI----AESAGNNSAAALPVNRPPPAVARSDHYSCSYAISP--ELLPASDDLTLDFM 240

Query: 314 VSGIVDPHFA*PLQLGEDAGCLHLG 240
           +  ++DPH+  PL L       H G
Sbjct: 241 LDSVLDPHWVEPLDLAWLKESTHTG 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,920
Number of Sequences: 37544
Number of extensions: 336095
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4965702224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)