Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C07_e435_05.seq
         (1542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                     105   7e-23
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.4  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 29   7.5  

>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score =  105 bits (253), Expect = 7e-23
 Identities = 53/107 (49%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
 Frame = +3

Query: 3   LFLGGGRATLGSSPGAVSALLAAFFPKFPTHSEDNRYHLQAFRHLYVLAVEPRLILPRDL 182
           LFLGGGR TL +S  AV+AL+ A +PKFP  S DNRYHLQAFRHLYVLA EPR+++ R++
Sbjct: 513 LFLGGGRYTLSTSGPAVAALVCALYPKFPISSTDNRYHLQAFRHLYVLAAEPRVLVTREV 572

Query: 183 DTGKLCYTHIQLV-----DLEGVVTEMKAPCILPELERLREVRINDP 308
           +    CY  IQ+             +M +PCILPE   +++ R + P
Sbjct: 573 ENNTACYVPIQVTLKSTEFYHETTLDMISPCILPEYNLIKK-RTSQP 618


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 87  PTHSEDNRYHLQAFRHLYVLAVEPRLILPRDLDTGKLCYTH 209
           PTH+E  R + + + H Y   V PRL  P         YTH
Sbjct: 2   PTHAEYTRAYTRRYTHAYTRRVHPRLHTPSTPTATHAEYTH 42


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 87  PTHSEDNRYHLQAFRHLYVLAVEPRLILPRDLDTGKLCYTH 209
           PTH+E  R + + + H Y   V PRL  P         YTH
Sbjct: 2   PTHAEYTRAYTRRYTHAYTRRVHPRLHTPSTPTATHAEYTH 42


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 375  TWCVDVKQRTGCLSYLDDPQGFLTXLSQTXT 467
            TWC D +     ++   +PQGFLT + Q  T
Sbjct: 1101 TWCFDGRPNVFWMTGFFNPQGFLTAMRQEVT 1131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,390,111
Number of Sequences: 59808
Number of extensions: 379035
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5023768556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)