Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C07_e435_05.seq
         (1542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu...    94   2e-19

>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiquitin
            ligase; contains similarity to Apc1/Tsg24 protein, the
            largest subunit of human anaphase-promoting complex
            (APC/C) GI:11967711 from [Homo sapiens]
          Length = 1678

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
 Frame = +3

Query: 3    LFLGGGRATLGSSPGAVSALLAAFFPKFPTHSEDNRYHLQAFRHLYVLAVEPRLILPRDL 182
            LFLGGG  T  ++ G+++ LL   +P+ P+   DNR HLQAFRHLYVLA E R +   D+
Sbjct: 1367 LFLGGGMRTFSTNNGSLAMLLITLYPRLPSGPNDNRCHLQAFRHLYVLATEARWLQTIDV 1426

Query: 183  DTGKLCYTHIQLVDLE-GVVTEMK----APCILPELERLREVRINDPRYWP 320
            D+G   Y  +++   E  + +E K     PCILPE   L+ + +  PRYWP
Sbjct: 1427 DSGLPVYAPLEVTVKETKLYSETKFCEITPCILPERAILKRICVCGPRYWP 1477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,401
Number of Sequences: 28952
Number of extensions: 246842
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4134955968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)