Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C06_e427_06.seq
         (1552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   7.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   9.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 356 YXYMYSPYESXKTYQLQAPXYXQXEVPXPPKYGSY 460
           Y Y Y+ Y     Y+       Q  VP P  YG++
Sbjct: 329 YKYNYNNYNKKLYYKNYIINIEQIPVPVPVYYGNF 363


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 24  WHRGVHASSFPKLTNISV*RP*PF 95
           WH  +  + FPKL ++   R  PF
Sbjct: 263 WHEPIPEAYFPKLDSLVASRTWPF 286


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +2

Query: 326 LSPNVSPTXRYXYMYSPYESXKTYQLQAPXYXQXEVPXPPKYGSY 460
           LS N      Y Y Y+     K          Q  +P P  YG++
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +2

Query: 326 LSPNVSPTXRYXYMYSPYESXKTYQLQAPXYXQXEVPXPPKYGSY 460
           LS N      Y Y Y+     K          Q  +P P  YG++
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +2

Query: 326 LSPNVSPTXRYXYMYSPYESXKTYQLQAPXYXQXEVPXPPKYGSY 460
           LS N      Y Y Y+     K          Q  +P P  YG++
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +2

Query: 326 LSPNVSPTXRYXYMYSPYESXKTYQLQAPXYXQXEVPXPPKYGSY 460
           LS N      Y Y Y+     K          Q  +P P  YG++
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNF 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,245
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54429375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)