Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C05_e419_05.seq
         (1562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)                    31   3.3  
SB_6305| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.096)             30   4.4  

>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
          Length = 287

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +2

Query: 281 DVQRFCACRTSLPPMQIATNDIYEXXXXXXXXXXXXXRVDSMESYGTNDSNPF 439
           ++Q+ C  +T+  PM++ T +  E               +S   YG ND++ +
Sbjct: 17  EIQQICEKKTTREPMRMNTENSREAASTTERSEGASGATNSQPHYGANDASDY 69


>SB_6305| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.096)
          Length = 155

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -2

Query: 445 ESERI*IVRSITLHAVNSGTIIAVVTIVRGVL----VDVVCSYLHRR*RCTAG 299
           E E I + R+    + ++GTI+AVV I+  V+    + V C Y   R + TAG
Sbjct: 53  EGEAIVLGRTSPDKSTSTGTIVAVVVILLAVILVIGIVVFCKYWRNRHQATAG 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,364
Number of Sequences: 59808
Number of extensions: 313403
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)