Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C05_e419_05.seq
         (1562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    32   1.3  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      32   1.3  

>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 185 ETRIAKPLGIASRQRSSAHPPTVVQXDARAEIDVQRFC 298
           +T+I KPL ++S Q     P  ++  DA+ ++D+ R C
Sbjct: 556 DTQIGKPLMMSSIQNRGKEPDELISGDAKPKLDLFRTC 593


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 185 ETRIAKPLGIASRQRSSAHPPTVVQXDARAEIDVQRFC 298
           +T+I KPL ++S Q     P  ++  DA+ ++D+ R C
Sbjct: 556 DTQIGKPLMMSSIQNRGKEPDELISGDAKPKLDLFRTC 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,345
Number of Sequences: 27780
Number of extensions: 225723
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)