Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C04_e411_06.seq
         (1551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    50   9e-07
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    50   9e-07
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    29   2.3  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   7.0  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   9.2  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 27/60 (45%), Positives = 31/60 (51%)
 Frame = +3

Query: 315 GKLHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 494
           GK+HGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 27/60 (45%), Positives = 31/60 (51%)
 Frame = +3

Query: 315 GKLHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 494
           GK+HGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 132 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 245
           T   D+N QES+  +     LL +VES    L MC AP
Sbjct: 120 TEAGDINRQESVSMVPP---LLLNVESHHKVLDMCAAP 154


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 682 LSWGNXRGFSQSRTLXNDGAVNC 614
           L WG   G++  RTL +   VNC
Sbjct: 310 LYWGGVLGYASPRTLTDASVVNC 332


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 499 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 380
           FYEL      RP + +    LL+ +++  ++ +L FFF C
Sbjct: 6   FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,838,496
Number of Sequences: 5004
Number of extensions: 59788
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)