Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C04_e411_06.seq
         (1551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           66   7e-11
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    29   7.5  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 66.1 bits (154), Expect = 7e-11
 Identities = 31/59 (52%), Positives = 37/59 (62%)
 Frame = +3

Query: 315 GKLHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 491
           GK+HGSLARAGKV+GQTP                  +QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 138 VLDVNGQESIGDIK--NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTE 287
           +L+++     G I   N+L+ L+D         +CG PL  SC  S L+S E
Sbjct: 725 ILNLSNNHLSGKIPTGNQLQTLSDPSIYHNNYGLCGFPLNISCTSSSLASDE 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,644,362
Number of Sequences: 37544
Number of extensions: 526475
Number of successful extensions: 1052
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)